Clinical-Genomics / cg / 21134038641

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github

Implement sequencing qc for raw data based on thresholds (#4831)(minor)

## Description
Closes: https://github.com/Clinical-Genomics/production-automation/issues/14
Make raw data use the application thresholds for sequencing QC. Make all cases sequenced in PacBio use yield for QC, and all others use reads.

### Added

- utils functions for raw data sequencing qc
- add qc checks for yield based cases

### Changed

- Fastq raw data QC uses expected reads, not "any sample has reads"

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Co-authored-by: islean <isak.ohlsson.angnell@gmail.com>
Co-authored-by: Rasmus Burge <80392398+RasmusBurge-CG@users.noreply.github.com>
Co-authored-by: Linnéa Löfdahl <linnea.lofdahl@scilifelab.se>

21 of 21 new or added lines in 2 files covered. (100.0%)

28248 of 32810 relevant lines covered (86.1%)

0.86 hits per line