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Clinical-Genomics / cg / 21032473226
86%

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DEFAULT BRANCH: master
Ran 15 Jan 2026 01:14PM UTC
Jobs 1
Files 886
Run time 1min
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15 Jan 2026 01:11PM UTC coverage: 86.068% (+0.04%) from 86.031%
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Implement yield based sequencing qc for Nallo (#4821)(minor)

## Description
Closes https://github.com/Clinical-Genomics/production-automation/issues/11
Add sequeincing QC criteria using yield for Nallo

### Added

- Function `case_pass_sequencing_qc_on_hifi_yield` to be used for Nallo cases
- Functions to evaluate sequencing qc on yield for express samples.

### Changed

- Renamed function using reads to include the suffix `on_reads`
- Implemented some functionality as properties in the Store models instead of utils methods
---------

Co-authored-by: Rasmus Burge <80392398+RasmusBurge-CG@users.noreply.github.com>
Co-authored-by: Linnéa Löfdahl <linnea.lofdahl@scilifelab.se>
Co-authored-by: Sebastian Diaz <juan.sebastian.diaz.boada@scilifelab.se>

62 of 71 new or added lines in 5 files covered. (87.32%)

1 existing line in 1 file now uncovered.

28221 of 32789 relevant lines covered (86.07%)

0.86 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
2
93.27
-0.17% cg/store/models.py
3
90.0
23.33% cg/services/sequencing_qc_service/sequencing_qc_service.py
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81.72
5.53% cg/services/sequencing_qc_service/quality_checks/utils.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
81.72
5.53% cg/services/sequencing_qc_service/quality_checks/utils.py
Jobs
ID Job ID Ran Files Coverage
1 21032473226.1 15 Jan 2026 01:14PM UTC 886
86.07
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Source Files on build 21032473226
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  • Changed 5
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  • Coverage Changed 5
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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