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BioJulia / Bio.jl / 2207
64%

Build:
DEFAULT BRANCH: master
Ran 29 Aug 2016 10:27PM UTC
Jobs 4
Files 81
Run time 24min
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Create a majority vote sequence from a vector of sequences (#279)

* Added a new composition method for tuples of nucleotides.

* Added consensus method

* Corrected a dumb mistake

* Corrected spelling error

* Added mostfrequent method in src/seq/composition.jl

* Corrected my moronic mistake

* added convert statement to mostfrequent

* Added 3 majority vote algorithms

* majorityvote

* Progress with majorityvote

* majorityvote draft

* moved majorityvote

* Restored branch_basics.jl

* Corrected typo

* Removed unessecery convert statement

* Changed structure of majorityvote

* Corrected error in majorityvote

* added majorityvote2 for comparrison purposes

* removed now redundant composition code

* Added docstring for majorityvote

* First draft at generated majorityvote

* Altered names to avoid parameter clash

* corrected error in edited majorityvote

* Corrected RNA_T to RNA_U

* Added a version of seqmatrix that converts the nucleotides to some other type as it builds the matrix

* made majorityvote work for dna and rna without need for generated function

* Added tests for seqmatrix method

* Added majorityvote tests

* Corrected goof

* majorityvote added to exports

* Implement all @bicycle suggestions

41 of 41 new or added lines in 1 file covered. (100.0%)

5044 of 6099 relevant lines covered (82.7%)

5533046.47 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
100.0
src/seq/bioseq.jl
Jobs
ID Job ID Ran Files Coverage
1 2207.1 29 Aug 2016 10:29PM UTC 0
82.69
Travis Job 2207.1
2 2207.2 29 Aug 2016 10:27PM UTC 0
82.67
Travis Job 2207.2
3 2207.3 29 Aug 2016 10:51PM UTC 0
82.7
Travis Job 2207.3
4 2207.4 29 Aug 2016 10:50PM UTC 0
82.69
Travis Job 2207.4
Source Files on build 2207
Detailed source file information is not available for this build.
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