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Ran 29 Aug 2016 10:51PM UTC

Files 81

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Committed 29 Aug 2016 10:10PM UTC coverage: 82.702% (+0.1%) from 82.597%

Job # 2207.3

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Create a majority vote sequence from a vector of sequences (#279)

* Added a new composition method for tuples of nucleotides.

* Added consensus method

* Corrected a dumb mistake

* Corrected spelling error

* Added mostfrequent method in src/seq/composition.jl

* Corrected my moronic mistake

* added convert statement to mostfrequent

* Added 3 majority vote algorithms

* majorityvote

* Progress with majorityvote

* majorityvote draft

* moved majorityvote

* Restored branch_basics.jl

* Corrected typo

* Removed unessecery convert statement

* Changed structure of majorityvote

* Corrected error in majorityvote

* added majorityvote2 for comparrison purposes

* removed now redundant composition code

* Added docstring for majorityvote

* First draft at generated majorityvote

* Altered names to avoid parameter clash

* corrected error in edited majorityvote

* Corrected RNA_T to RNA_U

* Added a version of seqmatrix that converts the nucleotides to some other type as it builds the matrix

* made majorityvote work for dna and rna without need for generated function

* Added tests for seqmatrix method

* Added majorityvote tests

* Corrected goof

* majorityvote added to exports

* Implement all @bicycle suggestions

Coverage Stats

5044 of 6099 relevant lines covered (82.7%)

1329560.71 hits per line

BioJulia / Bio.jl / 2207 / 3
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master: 64%

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BioJulia / Bio.jl / 2207 / 3
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