BioJulia / Bio.jl / 2213

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travis-ci

BAM and SAM formats (#265)

* add BAM/SAM file formats

* add tests

* add tests on SAM

* add more tests

* clean up

* update some docs

* update docs

* rename variables

* fix SAM

* fixup! fix SAM

* fixup! fixup! fix SAM

* address Ward's comments

* address Murray's comments (and fix typos)

* fixup! address Murray's comments (and fix typos)

* rename refid => refindex

* fix slow copy of SAMRecord (hope to fix the CI failure)

* read a SAM header before parsing

805 of 805 new or added lines in 17 files covered. (100.0%)

5615 of 6912 relevant lines covered (81.24%)

3385245.54 hits per line