cokelaer / sequana / 7117316673
74%
master: 67%

LAST BUILD BRANCH: dev
DEFAULT BRANCH: master
Ran
Jobs 3
Files 164
Run time 36s
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coverage: 75.413% (-0.07%) from 75.482%
7117316673

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github

cokelaer 
Update all codes to fulfill pre-commit hooks

392 of 456 new or added lines in 116 files covered. (85.96%)

1819 existing lines in 87 files now uncovered.

13680 of 18140 relevant lines covered (75.41%)

1.51 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
93.58
 0.0% sequana/bedtools.py
1
57.25
 0.0% sequana/find_motif.py
1
82.35
 0.0% sequana/gff3.py
1
73.54
 0.0% sequana/kraken/analysis.py
1
84.65
 0.0% sequana/modules_report/coverage.py
1
0.0
 0.0% sequana/multiqc/plots.py
1
82.35
 0.0% sequana/scripts/main/g4hunter.py
2
77.02
 0.0% sequana/G4hunter.py
2
0.0
 0.0% sequana/canu_scanner.py
2
75.55
 0.0% sequana/compare.py
2
0.0
 0.0% sequana/cython/setup.py
2
55.28
 0.0% sequana/demultiplex.py
2
48.0
 0.0% sequana/isoseq.py
2
0.0
 0.0% sequana/laa.py
2
78.57
 0.0% sequana/mixture.py
2
18.26
 0.0% sequana/modules_report/kraken.py
2
0.0
 0.0% sequana/modules_report/rnadiff.py
2
0.0
 0.0% sequana/modules_report/trf.py
2
97.76
 0.0% sequana/mpileup.py
2
77.47
 0.0% sequana/rnadiff.py
2
35.45
 0.0% sequana/scripts/main/rnadiff.py
3
0.0
 0.0% sequana/multiqc/isoseq.py
3
0.0
 0.0% sequana/multiqc/isoseq_qc.py
4
0.0
 0.0% sequana/multiqc/laa.py
4
0.0
 0.0% sequana/multiqc/pacbio_amplicon.py
5
0.0
 0.0% sequana/modules_report/bwa_bam_to_fastq.py
5
0.0
 0.0% sequana/modules_report/phix.py
5
0.0
 0.0% sequana/scripts/substractor.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.67
 0.0% sequana/codon.py
1
0.0
 0.0% sequana/cython/setup.py
1
100.0
 0.0% sequana/datatools.py
1
100.0
 0.0% sequana/fasta.py
1
93.75
 0.0% sequana/krona.py
1
100.0
 0.0% sequana/modules_report/bamqc.py
1
98.11
 0.0% sequana/modules_report/pacbio_input_bam.py
1
98.18
 0.0% sequana/scripts/main/main.py
1
95.65
 0.0% sequana/scripts/utils.py
2
97.69
 0.0% sequana/cigar.py
2
0.0
 0.0% sequana/modules_report/phix.py
2
80.49
 0.0% sequana/modules_report/variant_calling.py
2
75.0
 0.0% sequana/scripts/main/feature_count.py
2
82.35
 0.0% sequana/scripts/main/g4hunter.py
2
68.75
 0.0% sequana/scripts/main/rnaseq_compare.py
3
58.82
 0.0% sequana/scripts/main/gff_to_gtf.py
3
70.59
 0.0% sequana/scripts/main/gff_to_light_gff.py
3
85.71
 0.0% sequana/scripts/main/ribodesigner.py
3
32.14
 0.0% sequana/scripts/main/taxonomy.py
4
95.32
 0.0% sequana/databases.py
4
90.74
 0.0% sequana/freebayes_bcf_filter.py
4
84.65
 0.0% sequana/modules_report/coverage.py
4
92.86
 0.0% sequana/multiqc/kraken.py
4
97.28
 0.0% sequana/ribodesigner.py
4
59.09
 0.0% sequana/scripts/main/salmon.py
4
85.71
 0.0% sequana/scripts/main/variants_comparison.py
5
89.74
 0.0% sequana/multiqc/quality_control.py
5
59.09
 0.0% sequana/scripts/main/biomart.py
5
35.42
 0.0% sequana/scripts/main/fasta.py
5
70.0
 0.0% sequana/scripts/main/fastq.py
5
96.12
 0.0% sequana/snpeff.py
6
89.42
 0.0% sequana/multiqc/pacbio_qc.py
6
84.09
 0.0% sequana/scripts/main/mapping.py
7
90.76
 0.0% sequana/multiqc/bamtools_stats.py
7
90.12
 0.0% sequana/vcftools.py
8
86.18
 0.0% sequana/enrichment/panther.py
8
90.29
 0.0% sequana/fastqc.py
8
0.0
 0.0% sequana/modules_report/bwa_bam_to_fastq.py
10
89.66
 0.0% sequana/multiqc/coverage.py
10
95.28
 0.0% sequana/phantom.py
11
93.17
 0.0% sequana/fasta_gff_correction.py
11
14.93
 0.0% sequana/scripts/main/summary.py
12
85.71
 0.0% sequana/scripts/taxonomy.py
13
77.55
 0.0% sequana/enrichment/quickgo.py
13
46.3
 0.0% sequana/scripts/main/enrichment_panther.py
14
77.02
 0.0% sequana/G4hunter.py
14
39.44
 0.0% sequana/scripts/main/enrichment_uniprot.py
14
89.95
 0.0% sequana/taxonomy.py
15
97.59
 0.0% sequana/fastq.py
16
86.84
 0.0% sequana/freebayes_vcf_filter.py
16
0.0
 0.0% sequana/modules_report/trf.py
17
82.52
 0.0% sequana/scripts/coverage.py
18
93.79
 0.0% sequana/modules_report/cutadapt.py
18
92.13
 0.0% sequana/tools.py
19
57.25
 0.0% sequana/find_motif.py
20
25.35
 0.0% sequana/modules_report/fastq_stats.py
22
33.33
 0.0% sequana/scripts/main/enrichment_kegg.py
24
62.69
 0.0% sequana/enrichment/uniprot_enrichment.py
24
35.45
 0.0% sequana/scripts/main/rnadiff.py
25
82.35
 0.0% sequana/gff3.py
25
0.0
 0.0% sequana/multiqc/plots.py
25
55.38
 0.0% sequana/scripts/main/lane_merging.py
26
0.0
 0.0% sequana/multiqc/pacbio_amplicon.py
27
78.57
 0.0% sequana/mixture.py
27
0.0
 0.0% sequana/multiqc/isoseq_qc.py
27
0.0
 0.0% sequana/multiqc/laa.py
27
93.78
 0.0% sequana/sequence.py
28
81.18
 0.0% sequana/enrichment/kegg.py
31
20.0
 0.0% sequana/modules_report/kegg_enrichment.py
37
0.0
 0.0% sequana/multiqc/isoseq.py
38
8.77
 0.0% sequana/salmon.py
39
55.28
 0.0% sequana/demultiplex.py
39
0.0
 0.0% sequana/modules_report/rnadiff.py
40
70.9
 0.0% sequana/modules_report/multi_summary.py
42
21.35
 0.0% sequana/modules_report/uniprot_enrichment.py
45
18.26
 0.0% sequana/modules_report/kraken.py
47
0.0
 0.0% sequana/laa.py
49
75.55
 0.0% sequana/compare.py
49
18.1
 0.0% sequana/modules_report/panther_enrichment.py
50
0.0
 0.0% sequana/scripts/substractor.py
51
0.0
 0.0% sequana/canu_scanner.py
58
93.58
 0.0% sequana/bedtools.py
81
75.93
 0.0% sequana/pacbio.py
93
77.47
 0.0% sequana/rnadiff.py
105
48.0
 0.0% sequana/isoseq.py
106
73.54
 0.0% sequana/kraken/analysis.py
115
81.15
 0.0% sequana/bamtools.py
Jobs
ID Job ID Ran Files Coverage
1 7117316673.1 164
75.41
2 7117316673.2 164
75.41
3 7117316673.3 164
75.46
Source Files on build 7117316673