cokelaer / sequana / 7117302237
74%
master: 67%

LAST BUILD BRANCH: dev
DEFAULT BRANCH: master
Ran
Jobs 3
Files 164
Run time 17s
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coverage: 75.482% (+1.8%) from 73.729%
7117302237

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cokelaer 
Update version

13709 of 18162 relevant lines covered (75.48%)

2.26 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.67
 0.0% sequana/codon.py
1
93.75
 0.0% sequana/krona.py
1
98.11
 0.0% sequana/modules_report/pacbio_input_bam.py
1
98.18
 98.18% sequana/scripts/main/main.py
1
68.75
 68.75% sequana/scripts/main/rnaseq_compare.py
1
95.65
 0.0% sequana/scripts/utils.py
1
96.3
 0.0% sequana/viz/anova.py
2
0.0
 0.0% sequana/cython/setup.py
2
80.49
 0.0% sequana/modules_report/variant_calling.py
2
97.76
 -0.02% sequana/mpileup.py
2
75.0
 75.0% sequana/scripts/main/feature_count.py
2
32.14
 32.14% sequana/scripts/main/taxonomy.py
3
82.35
 82.35% sequana/scripts/main/g4hunter.py
3
58.82
 58.82% sequana/scripts/main/gff_to_gtf.py
3
70.59
 70.59% sequana/scripts/main/gff_to_light_gff.py
3
85.71
 0.0% sequana/scripts/main/ribodesigner.py
4
95.32
 0.0% sequana/databases.py
4
90.74
 0.0% sequana/freebayes_bcf_filter.py
4
0.0
 0.0% sequana/modules_report/phix.py
4
92.86
 0.0% sequana/multiqc/kraken.py
4
97.28
 -0.02% sequana/ribodesigner.py
4
35.42
 35.42% sequana/scripts/main/fasta.py
4
59.09
 59.09% sequana/scripts/main/salmon.py
4
85.71
 0.0% sequana/scripts/main/variants_comparison.py
4
91.67
 0.0% sequana/viz/clusterisation.py
5
89.74
 0.0% sequana/multiqc/quality_control.py
5
59.09
 59.09% sequana/scripts/main/biomart.py
5
70.0
 0.0% sequana/scripts/main/fastq.py
5
96.12
 -0.03% sequana/snpeff.py
6
84.65
 0.0% sequana/modules_report/coverage.py
6
89.42
 0.0% sequana/multiqc/pacbio_qc.py
6
84.09
 0.0% sequana/scripts/main/mapping.py
6
69.66
 -0.34% sequana/viz/dendogram.py
7
90.76
 0.0% sequana/multiqc/bamtools_stats.py
7
90.12
 -0.12% sequana/vcftools.py
8
86.18
 0.0% sequana/enrichment/panther.py
8
90.29
 0.0% sequana/fastqc.py
10
0.0
 0.0% sequana/modules_report/bwa_bam_to_fastq.py
10
89.66
 0.0% sequana/multiqc/coverage.py
10
95.28
 0.0% sequana/phantom.py
11
93.17
 -0.17% sequana/fasta_gff_correction.py
11
14.93
 14.93% sequana/scripts/main/summary.py
12
85.71
 0.0% sequana/scripts/taxonomy.py
12
94.82
 -0.02% sequana/viz/heatmap.py
13
77.55
 0.0% sequana/enrichment/quickgo.py
13
97.59
 0.0% sequana/fastq.py
13
46.3
 46.3% sequana/scripts/main/enrichment_panther.py
14
77.02
 0.0% sequana/G4hunter.py
14
39.44
 39.44% sequana/scripts/main/enrichment_uniprot.py
14
89.95
 0.0% sequana/taxonomy.py
16
86.84
 0.0% sequana/freebayes_vcf_filter.py
16
0.0
 0.0% sequana/modules_report/trf.py
17
82.52
 0.0% sequana/scripts/coverage.py
18
93.79
 0.0% sequana/modules_report/cutadapt.py
18
92.13
 -0.03% sequana/tools.py
20
57.25
 0.0% sequana/find_motif.py
20
25.35
 0.0% sequana/modules_report/fastq_stats.py
22
33.33
 33.33% sequana/scripts/main/enrichment_kegg.py
23
35.45
 35.45% sequana/scripts/main/rnadiff.py
24
62.69
 0.0% sequana/enrichment/uniprot_enrichment.py
25
55.38
 0.0% sequana/scripts/main/lane_merging.py
26
82.35
 0.0% sequana/gff3.py
27
0.0
 0.0% sequana/multiqc/plots.py
27
93.78
 0.0% sequana/sequence.py
28
81.18
 0.34% sequana/enrichment/kegg.py
29
78.57
 0.0% sequana/mixture.py
30
0.0
 0.0% sequana/multiqc/isoseq_qc.py
30
0.0
 0.0% sequana/multiqc/pacbio_amplicon.py
31
20.0
 0.0% sequana/modules_report/kegg_enrichment.py
31
0.0
 0.0% sequana/multiqc/laa.py
33
8.77
 8.77% sequana/salmon.py
38
21.35
 21.35% sequana/modules_report/uniprot_enrichment.py
39
0.0
 0.0% sequana/modules_report/rnadiff.py
40
55.28
 0.0% sequana/demultiplex.py
40
70.9
 0.0% sequana/modules_report/multi_summary.py
40
0.0
 0.0% sequana/multiqc/isoseq.py
47
18.26
 0.0% sequana/modules_report/kraken.py
49
0.0
 0.0% sequana/laa.py
49
18.1
 0.0% sequana/modules_report/panther_enrichment.py
51
75.55
 0.0% sequana/compare.py
51
0.0
 0.0% sequana/scripts/substractor.py
53
0.0
 0.0% sequana/canu_scanner.py
59
93.58
 -0.02% sequana/bedtools.py
81
75.93
 0.0% sequana/pacbio.py
95
77.47
 0.0% sequana/rnadiff.py
107
48.0
 -0.13% sequana/isoseq.py
107
73.54
 0.0% sequana/kraken/analysis.py
115
81.15
 -0.02% sequana/bamtools.py
Jobs
ID Job ID Ran Files Coverage
1 7117302237.1 164
75.41
2 7117302237.2 164
75.41
3 7117302237.3 164
75.46
Source Files on build 7117302237