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cokelaer / sequana / 6474212880
74%
master: 67%

Build:
Build:
LAST BUILD BRANCH: dev
DEFAULT BRANCH: master
Ran 10 Oct 2023 08:07PM UTC
Jobs 3
Files 159
Run time 5s
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10 Oct 2023 08:01PM UTC coverage: 73.876% (+0.07%) from 73.807%
6474212880

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github

cokelaer
General cleanup with tests (enrichment) and doc

- removed some rules
- remove old Changelog from doc

745 of 745 new or added lines in 71 files covered. (100.0%)

13113 of 17750 relevant lines covered (73.88%)

2.21 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
86.75
0.0% sequana/enrichment/panther.py
1
90.29
0.0% sequana/fastqc.py
1
0.0
0.0% sequana/modules_report/bwa_bam_to_fastq.py
1
89.24
0.0% sequana/modules_report/coverage.py
1
70.9
0.0% sequana/modules_report/multi_summary.py
1
80.49
0.0% sequana/modules_report/variant_calling.py
1
92.86
0.09% sequana/multiqc/kraken.py
1
89.74
0.0% sequana/multiqc/quality_control.py
1
91.67
0.0% sequana/viz/clusterisation.py
1
84.31
0.0% sequana/viz/volcano.py
2
62.0
0.0% sequana/itol.py
2
18.26
0.0% sequana/modules_report/kraken.py
2
0.0
0.0% sequana/modules_report/rnadiff.py
2
0.0
0.0% sequana/modules_report/trf.py
2
90.76
0.08% sequana/multiqc/bamtools_stats.py
2
89.42
0.0% sequana/multiqc/pacbio_qc.py
2
93.75
0.0% sequana/utils/tree.py
3
81.17
0.1% sequana/bamtools.py
3
0.0
0.0% sequana/multiqc/plots.py
3
78.01
-0.35% sequana/rnadiff.py
3
94.31
0.0% sequana/utils/datatables_js.py
3
78.13
0.0% sequana/viz/boxplot.py
3
21.43
0.0% sequana/viz/plotly.py
4
80.84
0.0% sequana/enrichment/kegg.py
4
73.24
0.0% sequana/kraken/analysis.py
4
25.35
0.0% sequana/modules_report/fastq_stats.py
5
0.0
0.0% sequana/multiqc/laa.py
5
59.34
0.0% sequana/scripts/taxonomy.py
6
0.0
0.0% sequana/multiqc/pacbio_amplicon.py
6
0.0
0.0% sequana/scripts/main/fasta.py
7
90.14
0.0% sequana/multiqc/coverage.py
8
0.0
0.0% sequana/multiqc/isoseq_qc.py
8
0.0
0.0% sequana/scripts/main/enrichment_uniprot.py
10
75.55
0.0% sequana/compare.py
11
70.0
0.0% sequana/viz/dendogram.py
28
0.0
0.0% sequana/multiqc/isoseq.py
32
0.0
0.0% sequana/scripts/substractor.py
35
0.0
0.0% sequana/laa.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.67
0.0% sequana/codon.py
1
93.33
0.0% sequana/lazyimports.py
1
98.11
0.0% sequana/modules_report/pacbio_input_bam.py
1
98.51
0.0% sequana/summary.py
1
93.75
0.0% sequana/utils/tree.py
1
96.3
0.0% sequana/viz/anova.py
2
93.33
0.0% sequana/gtf_fixer.py
2
80.49
0.0% sequana/modules_report/variant_calling.py
2
50.0
0.0% sequana/multiqc/config.py
2
90.14
0.0% sequana/multiqc/coverage.py
2
96.15
0.0% sequana/plots/canvasjs_base.py
2
87.5
0.0% sequana/sniffer.py
2
96.15
0.0% sequana/snpeff.py
2
94.31
0.0% sequana/utils/datatables_js.py
3
97.69
1.57% sequana/cigar.py
3
96.04
0.0% sequana/macs3.py
3
89.74
0.0% sequana/multiqc/quality_control.py
3
85.71
0.0% sequana/scripts/main/ribodesigner.py
4
97.47
0.0% sequana/iem.py
4
78.13
0.0% sequana/viz/boxplot.py
4
91.67
0.0% sequana/viz/clusterisation.py
5
95.32
0.03% sequana/databases.py
5
92.86
0.09% sequana/multiqc/kraken.py
5
0.0
0.0% sequana/scripts/main/enrichment_uniprot.py
5
90.24
0.0% sequana/vcftools.py
5
84.31
0.0% sequana/viz/volcano.py
6
89.42
0.0% sequana/multiqc/pacbio_qc.py
6
0.0
0.0% sequana/scripts/main/fasta.py
6
89.95
0.11% sequana/taxonomy.py
7
90.29
0.0% sequana/fastqc.py
7
75.93
0.04% sequana/pacbio.py
7
21.43
0.0% sequana/viz/plotly.py
8
86.84
0.0% sequana/freebayes_vcf_filter.py
8
59.52
0.0% sequana/genbank.py
8
90.76
0.08% sequana/multiqc/bamtools_stats.py
9
86.75
0.0% sequana/enrichment/panther.py
9
93.33
0.0% sequana/fasta_gff_correction.py
9
57.25
0.33% sequana/find_motif.py
9
0.0
0.0% sequana/multiqc/plots.py
9
95.28
0.0% sequana/phantom.py
9
55.38
0.0% sequana/scripts/main/lane_merging.py
9
94.84
0.0% sequana/viz/heatmap.py
10
93.79
0.02% sequana/modules_report/cutadapt.py
10
0.0
0.0% sequana/modules_report/trf.py
12
97.59
0.39% sequana/fastq.py
12
57.07
0.0% sequana/modules_report/summary.py
13
92.16
0.03% sequana/tools.py
14
70.0
0.0% sequana/viz/dendogram.py
17
62.69
0.0% sequana/enrichment/uniprot_enrichment.py
17
80.0
0.0% sequana/scripts/coverage.py
20
77.55
0.0% sequana/enrichment/quickgo.py
20
78.01
0.12% sequana/mixture.py
21
70.9
0.0% sequana/modules_report/multi_summary.py
21
0.0
0.0% sequana/multiqc/pacbio_amplicon.py
22
66.85
0.0% sequana/featurecounts.py
22
89.24
0.0% sequana/modules_report/coverage.py
24
0.0
0.0% sequana/multiqc/laa.py
25
0.0
0.0% sequana/multiqc/isoseq_qc.py
25
59.34
0.0% sequana/scripts/taxonomy.py
26
75.55
0.0% sequana/compare.py
26
93.78
0.03% sequana/sequence.py
27
55.28
0.0% sequana/demultiplex.py
30
25.35
0.0% sequana/modules_report/fastq_stats.py
33
0.0
0.0% sequana/salmon.py
34
0.0
0.0% sequana/scripts/substractor.py
36
95.09
0.02% sequana/bedtools.py
40
18.26
0.0% sequana/modules_report/kraken.py
40
0.0
0.0% sequana/multiqc/isoseq.py
48
17.97
0.0% sequana/pacbio_amplicon.py
49
80.84
0.0% sequana/enrichment/kegg.py
51
0.0
0.0% sequana/laa.py
82
81.17
0.1% sequana/bamtools.py
105
78.01
-0.35% sequana/rnadiff.py
119
73.24
0.0% sequana/kraken/analysis.py
120
0.0
0.0% sequana/modules_report/rnadiff.py
Jobs
ID Job ID Ran Files Coverage
1 6474212880.1 10 Oct 2023 08:07PM UTC 159
73.8
2 6474212880.2 10 Oct 2023 08:07PM UTC 159
73.86
3 6474212880.3 10 Oct 2023 08:08PM UTC 159
73.8
Source Files on build 6474212880
  • Tree
  • List 159
  • Changed 1
  • Source Changed 0
  • Coverage Changed 21
Coverage ∆ File Lines Relevant Covered Missed Hits/Line
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