cokelaer / sequana / 6474212880
74%
master: 67%

LAST BUILD BRANCH: dev
DEFAULT BRANCH: master
Ran
Jobs 3
Files 159
Run time 5s
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coverage: 73.876% (+0.07%) from 73.807%
6474212880

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github

cokelaer 
General cleanup with tests (enrichment) and doc

- removed some rules
- remove old Changelog from doc

745 of 745 new or added lines in 71 files covered. (100.0%)

13113 of 17750 relevant lines covered (73.88%)

2.21 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
1
86.75
 0.0% sequana/enrichment/panther.py
1
90.29
 0.0% sequana/fastqc.py
1
0.0
 0.0% sequana/modules_report/bwa_bam_to_fastq.py
1
89.24
 0.0% sequana/modules_report/coverage.py
1
70.9
 0.0% sequana/modules_report/multi_summary.py
1
80.49
 0.0% sequana/modules_report/variant_calling.py
1
92.86
 0.09% sequana/multiqc/kraken.py
1
89.74
 0.0% sequana/multiqc/quality_control.py
1
91.67
 0.0% sequana/viz/clusterisation.py
1
84.31
 0.0% sequana/viz/volcano.py
2
62.0
 0.0% sequana/itol.py
2
18.26
 0.0% sequana/modules_report/kraken.py
2
0.0
 0.0% sequana/modules_report/rnadiff.py
2
0.0
 0.0% sequana/modules_report/trf.py
2
90.76
 0.08% sequana/multiqc/bamtools_stats.py
2
89.42
 0.0% sequana/multiqc/pacbio_qc.py
2
93.75
 0.0% sequana/utils/tree.py
3
81.17
 0.1% sequana/bamtools.py
3
0.0
 0.0% sequana/multiqc/plots.py
3
78.01
 -0.35% sequana/rnadiff.py
3
94.31
 0.0% sequana/utils/datatables_js.py
3
78.13
 0.0% sequana/viz/boxplot.py
3
21.43
 0.0% sequana/viz/plotly.py
4
80.84
 0.0% sequana/enrichment/kegg.py
4
73.24
 0.0% sequana/kraken/analysis.py
4
25.35
 0.0% sequana/modules_report/fastq_stats.py
5
0.0
 0.0% sequana/multiqc/laa.py
5
59.34
 0.0% sequana/scripts/taxonomy.py
6
0.0
 0.0% sequana/multiqc/pacbio_amplicon.py
6
0.0
 0.0% sequana/scripts/main/fasta.py
7
90.14
 0.0% sequana/multiqc/coverage.py
8
0.0
 0.0% sequana/multiqc/isoseq_qc.py
8
0.0
 0.0% sequana/scripts/main/enrichment_uniprot.py
10
75.55
 0.0% sequana/compare.py
11
70.0
 0.0% sequana/viz/dendogram.py
28
0.0
 0.0% sequana/multiqc/isoseq.py
32
0.0
 0.0% sequana/scripts/substractor.py
35
0.0
 0.0% sequana/laa.py

Uncovered Existing Lines

Lines Coverage ∆ File
1
96.67
 0.0% sequana/codon.py
1
93.33
 0.0% sequana/lazyimports.py
1
98.11
 0.0% sequana/modules_report/pacbio_input_bam.py
1
98.51
 0.0% sequana/summary.py
1
93.75
 0.0% sequana/utils/tree.py
1
96.3
 0.0% sequana/viz/anova.py
2
93.33
 0.0% sequana/gtf_fixer.py
2
80.49
 0.0% sequana/modules_report/variant_calling.py
2
50.0
 0.0% sequana/multiqc/config.py
2
90.14
 0.0% sequana/multiqc/coverage.py
2
96.15
 0.0% sequana/plots/canvasjs_base.py
2
87.5
 0.0% sequana/sniffer.py
2
96.15
 0.0% sequana/snpeff.py
2
94.31
 0.0% sequana/utils/datatables_js.py
3
97.69
 1.57% sequana/cigar.py
3
96.04
 0.0% sequana/macs3.py
3
89.74
 0.0% sequana/multiqc/quality_control.py
3
85.71
 0.0% sequana/scripts/main/ribodesigner.py
4
97.47
 0.0% sequana/iem.py
4
78.13
 0.0% sequana/viz/boxplot.py
4
91.67
 0.0% sequana/viz/clusterisation.py
5
95.32
 0.03% sequana/databases.py
5
92.86
 0.09% sequana/multiqc/kraken.py
5
0.0
 0.0% sequana/scripts/main/enrichment_uniprot.py
5
90.24
 0.0% sequana/vcftools.py
5
84.31
 0.0% sequana/viz/volcano.py
6
89.42
 0.0% sequana/multiqc/pacbio_qc.py
6
0.0
 0.0% sequana/scripts/main/fasta.py
6
89.95
 0.11% sequana/taxonomy.py
7
90.29
 0.0% sequana/fastqc.py
7
75.93
 0.04% sequana/pacbio.py
7
21.43
 0.0% sequana/viz/plotly.py
8
86.84
 0.0% sequana/freebayes_vcf_filter.py
8
59.52
 0.0% sequana/genbank.py
8
90.76
 0.08% sequana/multiqc/bamtools_stats.py
9
86.75
 0.0% sequana/enrichment/panther.py
9
93.33
 0.0% sequana/fasta_gff_correction.py
9
57.25
 0.33% sequana/find_motif.py
9
0.0
 0.0% sequana/multiqc/plots.py
9
95.28
 0.0% sequana/phantom.py
9
55.38
 0.0% sequana/scripts/main/lane_merging.py
9
94.84
 0.0% sequana/viz/heatmap.py
10
93.79
 0.02% sequana/modules_report/cutadapt.py
10
0.0
 0.0% sequana/modules_report/trf.py
12
97.59
 0.39% sequana/fastq.py
12
57.07
 0.0% sequana/modules_report/summary.py
13
92.16
 0.03% sequana/tools.py
14
70.0
 0.0% sequana/viz/dendogram.py
17
62.69
 0.0% sequana/enrichment/uniprot_enrichment.py
17
80.0
 0.0% sequana/scripts/coverage.py
20
77.55
 0.0% sequana/enrichment/quickgo.py
20
78.01
 0.12% sequana/mixture.py
21
70.9
 0.0% sequana/modules_report/multi_summary.py
21
0.0
 0.0% sequana/multiqc/pacbio_amplicon.py
22
66.85
 0.0% sequana/featurecounts.py
22
89.24
 0.0% sequana/modules_report/coverage.py
24
0.0
 0.0% sequana/multiqc/laa.py
25
0.0
 0.0% sequana/multiqc/isoseq_qc.py
25
59.34
 0.0% sequana/scripts/taxonomy.py
26
75.55
 0.0% sequana/compare.py
26
93.78
 0.03% sequana/sequence.py
27
55.28
 0.0% sequana/demultiplex.py
30
25.35
 0.0% sequana/modules_report/fastq_stats.py
33
0.0
 0.0% sequana/salmon.py
34
0.0
 0.0% sequana/scripts/substractor.py
36
95.09
 0.02% sequana/bedtools.py
40
18.26
 0.0% sequana/modules_report/kraken.py
40
0.0
 0.0% sequana/multiqc/isoseq.py
48
17.97
 0.0% sequana/pacbio_amplicon.py
49
80.84
 0.0% sequana/enrichment/kegg.py
51
0.0
 0.0% sequana/laa.py
82
81.17
 0.1% sequana/bamtools.py
105
78.01
 -0.35% sequana/rnadiff.py
119
73.24
 0.0% sequana/kraken/analysis.py
120
0.0
 0.0% sequana/modules_report/rnadiff.py
Jobs
ID Job ID Ran Files Coverage
1 6474212880.1 159
73.8
2 6474212880.2 159
73.86
3 6474212880.3 159
73.8
Source Files on build 6474212880