1036
73%
master: 81%

Ran 07 Jul 2015 08:33PM UTC

Jobs 1

Files 384

Run time 15s

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Build # 1036

Build Type

push

travis-ci

Committed by

droazen

Commit Message

Common read interfaces, with dataflow support

-Converted the core of the hellbender codebase to use common interfaces
 (GATKRead and MutableGATKRead) for working with reads, whether they
 happen to be SAMRecords or Google model reads.

-Wrote necessary coders, etc., to allow the new interface types to work with
 Google dataflow, and ported the dataflow portion of the codebase to use them.

-Picard tools and utilities were not converted, as they proved too tricky
 to adjust to the new semantics of the GATKRead interface.

Run Details

15311 of 20960 relevant lines covered (73.05%)

0.73 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	1036.1 (TERM=dumb)	07 Jul 2015 08:33PM UTC	0	73.05	Travis Job 1036.1

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