broadinstitute / viral-ngs / 6100
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DEFAULT BRANCH: master
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Jobs 2
Files 41
Run time 9min
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wdl demux changes to support novaseq (#834)

* reduce memory limit given to IlluminaBasecallsToSam; gc before calling

* chmod +x new mem_in_mb shell scripts

* raise memory to 90% of max

* reduce demux core count 64 -> 32

2 of 2 new or added lines in 1 file covered. (100.0%)

2007 of 6223 relevant lines covered (32.25%)

1.02 hits per line

Jobs
ID Job ID Ran Files Coverage
5 6100.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 0
71.51
 Travis Job 6100.5
6 6100.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 0
32.25
 Travis Job 6100.6
Source Files on build 6100
Detailed source file information is not available for this build.