broadinstitute / viral-ngs / 6097
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DEFAULT BRANCH: master
Ran
Jobs 2
Files 41
Run time 8min
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fastqc 0.11.5 -> 0.11.7 (#833)

update fastqc to latest version to accomodate novaseq; this should solve the error: "Too many tiles (>500) so giving up trying to do per-tile qualities since we're probably parsing the file wrongly
"

1 of 1 new or added line in 1 file covered. (100.0%)

2007 of 6223 relevant lines covered (32.25%)

1.02 hits per line

Jobs
ID Job ID Ran Files Coverage
5 6097.5 (TRAVIS_JOB=test_py36 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 0
71.51
 Travis Job 6097.5
6 6097.6 (TRAVIS_JOB=test_snakemake PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov reports --cov taxon_filter --cov tools --cov util" BUNDLE_SECRET=[secure]) 0
32.25
 Travis Job 6097.6
Source Files on build 6097
Detailed source file information is not available for this build.