750
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Ran 22 Jan 2018 09:15PM UTC

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Files 97

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Build # 750

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push

travis-ci

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web-flow

Commit Message

Access model components as attributes (#213)

* Access model components as attributes

Following discussions on PR #213, I've implemented @jmuhlich's
suggestion of allowing access to model components as attributes,
as well as items. There's also a new model.components property, 
which gets all model components. Thus, we can do things like:

    model.monomers.Bax    # Get the Monomer 'Bax'
    model.components.rule_cat  # Get the Rule 'rule_cat'
    model.parameters.kf1  # Get the Parameter 'kf1'
    model.components.kf1       # Ditto

This should help when importing models, and reduce the need for
`alias_model_components()`, which can cause namespace issues,
particularly when we want access to components from more than
one model.

In actual use, one could alias `model.monomers` for easy access,
e.g.

    import model1
    import model2

    m1 = model1.monomers
    m2 = model2.monomers

    m1.Bax  # Bax from model 1
    m2.Bax  # Bax from model 2

* Better AttributeError msg, remove comment

Based on PR #213 feedback from @jmuhlich 

* Implement ComponentSet.__setstate__()

Fixes infinite recursion when unpickling models

* model.comps is now model.components

Run Details

6237 of 8320 relevant lines covered (74.96%)

1.48 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	750.1	22 Jan 2018 09:15PM UTC	97	74.51	Travis Job 750.1
2	750.2	22 Jan 2018 09:16PM UTC	97	73.77	Travis Job 750.2

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