bigdatagenomics / adam / 2671

DEFAULT BRANCH: master
Ran
Jobs 8
Files 149
Run time 1min
Badge
Embed ▾
README BADGES
x

If you need to use a raster PNG badge, change the '.svg' to '.png' in the link

Markdown

Textile

RDoc

HTML

Rst
2671

push

jenkins

heuermh 
[ADAM-1462] Add quality score binner.

Resolves #1462. Adds an API for binning quality scores to `AlignmentRecordRDD`
and `FragmentRDD`. Exposes this on the `Transform` CLI.

58 of 58 new or added lines in 4 files covered. (100.0%)

5121 of 6244 relevant lines covered (82.01%)

6.55 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
3
85.71
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/FragmentRDD.scala
42
82.19
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
67
56.28
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
Jobs
ID Job ID Ran Files Coverage
1 2671.1 251
81.87
2 2671.2 251
81.85
3 2671.3 251
81.85
4 2671.4 251
81.87
5 2671.5 251
81.87
6 2671.6 251
81.87
7 2671.7 251
81.85
8 2671.8 251
81.85
Source Files on build 2671
Coverage ∆ File Lines Relevant Covered Missed Hits/Line