bigdatagenomics / adam / 2672

DEFAULT BRANCH: master
Ran
Jobs 8
Files 150
Run time 2min
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jenkins

heuermh 
[ADAM-1169] Write GFF header line pragma in single file mode.

Resolves #1169.

14 of 14 new or added lines in 2 files covered. (100.0%)

5128 of 6259 relevant lines covered (81.93%)

6.54 hits per line

Uncovered Existing Lines

Lines Coverage ∆ File
1
87.5
 -6.25% adam-cli/src/main/scala/org/bdgenomics/adam/cli/TransformFeatures.scala
1
94.27
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
91.67
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
1
89.73
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala
1
61.25
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
82.54
 -1.59% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTarget.scala
1
87.38
 -0.97% adam-core/src/main/scala/org/bdgenomics/adam/util/TwoBitFile.scala
1
88.24
 -5.88% adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
96.23
 -1.89% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/FlagStat.scala
1
92.23
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
2
75.93
 0.0% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
2
90.1
 2.97% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
2
70.0
 -0.5% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
3
81.65
 0.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
3
73.33
 -13.33% adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
3
93.02
 -3.49% adam-core/src/main/scala/org/bdgenomics/adam/converters/SAMRecordConverter.scala
3
93.26
 -3.37% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
4
62.34
 -2.6% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
5
78.3
 -0.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2672.1 252
81.75
2 2672.2 252
81.85
3 2672.3 252
81.74
4 2672.4 252
81.87
5 2672.5 252
81.87
6 2672.6 252
81.75
7 2672.7 252
81.74
8 2672.8 252
81.85
Source Files on build 2672
Coverage ∆ File Lines Relevant Covered Missed Hits/Line