bigdatagenomics / adam / 2617

DEFAULT BRANCH: master
Ran
Jobs 8
Files 147
Run time 1min
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2617

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jenkins

heuermh 
[ADAM-1480] Add switch to disable the fast concat method.

Resolves #1478.

42 of 42 new or added lines in 12 files covered. (100.0%)

4998 of 6111 relevant lines covered (81.79%)

6.53 hits per line

New Missed Lines in Diff

Lines Coverage ∆ File
3
6.67
 -0.48% adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Vcf.scala
12
82.58
 -5.13% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureRDD.scala

Uncovered Existing Lines

Lines Coverage ∆ File
1
77.78
 2.31% adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
1
94.27
 -0.52% adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1
61.25
 -1.25% adam-core/src/main/scala/org/bdgenomics/adam/models/RecordGroupDictionary.scala
1
62.16
 -2.7% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1
95.0
 -0.38% adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/realignment/RealignIndels.scala
1
80.0
 -5.0% adam-core/src/main/scala/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.scala
2
55.06
 0.82% adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2
95.45
 -3.03% adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala
2
85.02
 -0.15% adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
2
91.67
 -4.17% adam-core/src/main/scala/org/bdgenomics/adam/models/ReferencePosition.scala
2
69.54
 -1.02% adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
2
62.34
 3.9% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
3
87.13
 -1.98% adam-core/src/main/scala/org/bdgenomics/adam/models/SequenceDictionary.scala
4
94.38
 -4.49% adam-core/src/main/scala/org/bdgenomics/adam/converters/TranscriptEffectConverter.scala
5
80.73
 -2.75% adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
7
79.05
 -0.25% adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala
Jobs
ID Job ID Ran Files Coverage
1 2617.1 248
81.67
2 2617.2 248
81.67
3 2617.3 248
81.64
4 2617.4 248
81.66
5 2617.5 248
81.64
6 2617.6 248
81.66
7 2617.7 248
81.66
8 2617.8 248
81.66
Source Files on build 2617
Coverage ∆ File Lines Relevant Covered Missed Hits/Line