2616

Ran 24 Apr 2017 02:10PM UTC

Jobs 8

Files 147

Run time 1min

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Build # 2616

Build Type

push

jenkins

Committed by

fnothaft

Commit Message

[ADAM-1481] Refactor ADAMContext loadXxx methods for consistency (#1487)

Refactor ADAMContext loadXxx methods for consistency

* Format long lines
* Minor doc fixes
* Add FileExtensions, confirm pathName doc strings
* Use compression codecs from Hadoop configuration instead of hardcoded extensions.

Run Details

228 of 228 new or added lines in 15 files covered. (100.0%)

4986 of 6085 relevant lines covered (81.94%)

6.55 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
1	6.67	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/ADAM2Fastq.scala
1	11.76	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountContigKmers.scala
1	9.09	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/CountReadKmers.scala
1	3.28	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/FlagStat.scala
2	50.0	0.0%	adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
2	90.0	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/util/FileExtensions.scala
3	54.24	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
35	79.3	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Uncovered Existing Lines

Lines	Coverage	∆	File
1	50.0	0.0%	adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
4	54.24	0.0%	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
43	79.3	0.0%	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Jobs

ID	Job ID	Ran	Files	Coverage
1	2616.1	24 Apr 2017 02:10PM UTC	247	81.82
2	2616.2	24 Apr 2017 02:10PM UTC	247	81.81
3	2616.3	24 Apr 2017 02:10PM UTC	247	81.82
4	2616.4	24 Apr 2017 02:10PM UTC	247	81.81
5	2616.5	24 Apr 2017 02:10PM UTC	247	81.84
6	2616.6	24 Apr 2017 02:10PM UTC	247	81.84
7	2616.7	24 Apr 2017 02:10PM UTC	247	81.86
8	2616.8	24 Apr 2017 02:10PM UTC	247	81.86

Source Files on build 2616

Coverage	∆	File	Lines	Relevant	Covered	Missed	Hits/Line

bigdatagenomics / adam / 2616

README BADGES
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New Missed Lines in Diff

Uncovered Existing Lines

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Source Files on build 2616

bigdatagenomics / adam / 2616

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

New Missed Lines in Diff

Uncovered Existing Lines

Jobs

Source Files on build 2616

README BADGES
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