2618

Ran 24 Apr 2017 10:38PM UTC

Jobs 8

Files 147

Run time 1min

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Build # 2618

Build Type

push

jenkins

Committed by

fnothaft

Commit Message

Cleaning up code in ReferenceRegion.scala, adding threshold options

More cleanup and adding isNearby

Adding threshold logic to overlaps and covers

Replacing var with fold call

Adding overlapsBy and coversBy and related tests

Adding subtract, addressing reviewer comments

Addressing reviewer comments

Addressing reviewer comments

Run Details

60 of 60 new or added lines in 2 files covered. (100.0%)

5018 of 6140 relevant lines covered (81.73%)

6.53 hits per line

New Missed Lines in Diff

Lines	Coverage	∆	File
3	100.0		adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala

Uncovered Existing Lines

Lines	Coverage	File
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicRDD.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/Features.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/util/IndexedFastaFile.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/MDTagging.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/NonoverlappingRegions.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/MdTag.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/converters/VariantContextConverter.scala
1	100.0	adam-core/src/main/scala/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.scala
2	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/Transform.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/feature/FeatureParser.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordRDD.scala
2	100.0	adam-core/src/main/scala/org/bdgenomics/adam/converters/AlignmentRecordConverter.scala
3	100.0	adam-cli/src/main/scala/org/bdgenomics/adam/cli/View.scala
5	100.0	adam-core/src/main/scala/org/bdgenomics/adam/models/SAMFileHeaderWritable.scala
7	100.0	adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala

Jobs

ID	Job ID	Ran	Coverage
1	2618.1	24 Apr 2017 10:38PM UTC	81.66
2	2618.2	24 Apr 2017 10:38PM UTC	81.66
3	2618.3	24 Apr 2017 10:38PM UTC	81.56
4	2618.4	24 Apr 2017 10:38PM UTC	81.56
5	2618.5	24 Apr 2017 10:38PM UTC	81.64
6	2618.6	24 Apr 2017 10:38PM UTC	81.64
7	2618.7	24 Apr 2017 10:39PM UTC	81.55
8	2618.8	24 Apr 2017 10:39PM UTC	81.55

Source Files on build 2618

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bigdatagenomics / adam / 2618

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bigdatagenomics / adam / 2618

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