jeremymcrae / clinical-filter / 51

Builds Branch Commit Type Ran Committer Via Coverage
51 master tidied up DDG2P CNV checking function push jeremymcrae travis-ci pending completion   set done
50 master better code commenting for previous change push Jeremy McRae travis-ci pending completion   set done
49 master only exclude compound hets where both are missense if we lack parents push Jeremy McRae travis-ci pending completion   set done
48 master test if compound pair is benign when lacking parents push Jeremy McRae travis-ci pending completion   set done
47 master change ExAC threshold for X-linked dominant to use the het and hemi allele counts push jeremymcrae travis-ci pending completion   set done
46 master update makefile to not install deprecated config files push Jeremy McRae travis-ci pending completion   set done
45 master allow biparental CNVs with unaffected parents when copynumber=0 push jeremymcrae travis-ci pending completion   set done
44 master exclude missense variants with polyphen=benign, even for proband-only push Jeremy McRae travis-ci pending completion   set done
43 master changed compound het checks to only include compound hets in trans We now require compound hets to be transmitted from both parents, rather than allowing for de novos in compound hets, or where one or both parent/s are affected. The unit tests h... push Jeremy McRae travis-ci pending completion   set done
42 master when excluding variants due to high ExAC frequencies, we should allow for the variant passing under multiple inheritance modes, and only exclude the modes where the variant exceeds the mode-specific threshold. push Jeremy McRae travis-ci pending completion   set done
41 master allow for chrX CNVs to be transmitted from an unaffected mother to an affected male child push Jeremy McRae travis-ci pending completion   set done
40 master reworked CNV inheritance in known genes, changed paramters of Inheritance class push Jeremy McRae travis-ci pending completion   set done
39 master updated unit test for compound hets in proband-only push Jeremy McRae travis-ci pending completion   set done
37 master fix bug when variant lacks HGNC symbols and we are not using a list of known genes push jeremymcrae travis-ci pending completion   set done
36 master removed unecessary code push Jeremy McRae travis-ci pending completion   set done