jeremymcrae / clinical-filter / 140

Builds Branch Commit Type Ran Committer Via Coverage
140 master allow for coding_sequence_variant consequendes in CNVs push jeremymcrae travis-ci pending completion   set done
139 master code cleaning push jeremymcrae travis-ci pending completion   set done
138 master rename function and improve docstrings push jeremymcrae travis-ci pending completion   set done
137 master added unit tests for checking for zero depth alleles, and getting gene and consequences under multiallelic and with masked zero depth allele scenarios push jeremymcrae travis-ci pending completion   set done
136 master fix handling alt alleles with zero depth Previously we mucked around with the HGNC and ENST lists, but I have refactored this, so that we identify alt alleles with zero depth, then mask them from the gene and consequence lists. This meant the gen... push jeremymcrae travis-ci pending completion   set done
135 master update unit tests for parental CNV initialisation push jeremymcrae travis-ci pending completion   set done
133 master avoid error when getting polyphen predictions for multi-allelic compound het candidate (fixes one variant in one proband in 8k cohort) push jeremymcrae travis-ci pending completion   set done
132 master fix MNV bug where masked stop gained MNVs appear non-functional push jeremymcrae travis-ci pending completion   set done
131 master updated helper scripts to new datafiles and removed alternate ID option push jeremymcrae travis-ci pending completion   set done
129 master update version number push jeremymcrae travis-ci pending completion   set done
130 0.4.8 update version number push jeremymcrae travis-ci pending completion   set done
128 doubletons fix unit test for doubletons in X-linked dominant genes push jeremymcrae travis-ci pending completion   set done
127 doubletons fix missing class reference push jeremymcrae travis-ci pending completion   set done
124 master update version push jeremymcrae travis-ci pending completion   set done
123 0.4.7 update version push jeremymcrae travis-ci pending completion   set done