broadinstitute / hellbender / 222

Builds Branch Commit Type Ran Committer Via Coverage
222 lb_unix_style_options Major changes to the command line parsing system -using jopt-simple to do the actual parsing -supports short (-h) and long (--help) styles -supports boolean flags with or without an argument -options are now case sensitive -argument collections ca... push lbergelson travis-pro pending completion   set done
221 master wip Pull #151 akiezun travis-pro pending completion   set done
219 lb_unix_style_options Addressing David's comments. push lbergelson travis-pro pending completion   set done
220 master Addressing David's comments. Pull #135 lbergelson travis-pro pending completion   set done
218 ak_LeftAlignIndels wip push akiezun travis-pro pending completion   set done
217 ak_clipReads clips push akiezun travis-pro pending completion   set done
216 master Adding gradle refresh to README push lbergelson travis-pro pending completion   set done
215 master Merge pull request #136 from broadinstitute/dr_dynamic_window_in_referencecontext Allow reference window in ReferenceContext objects to be set dynamically by tools push droazen travis-pro pending completion   set done
214 master Allow reference window in ReferenceContext objects to be set dynamically by tools Some tools need to dynamically resize the reference context window based upon other input. This commit exposes a setWindow() method to allow tools to do this. -To ... Pull #136 droazen travis-pro pending completion   set done
213 dr_dynamic_window_in_referencecontext Allow reference window in ReferenceContext objects to be set dynamically by tools Some tools need to dynamically resize the reference context window based upon other input. This commit exposes a setWindow() method to allow tools to do this. -To ... push droazen travis-pro pending completion   set done
212 master Responding to Adam's comments. Pull #135 lbergelson travis-pro pending completion   set done
211 lb_unix_style_options Responding to Adam's comments. push lbergelson travis-pro pending completion   set done
209 master addressing matt's comments Pull #135 lbergelson travis-pro pending completion   set done
208 lb_unix_style_options addressing matt's comments push lbergelson travis-pro pending completion   set done
205 master Allow reference window in ReferenceContext objects to be set dynamically by tools Some tools need to dynamically resize the reference context window based upon other input. This commit exposes a setWindow() method to allow tools to do this. -To ... Pull #136 droazen travis-pro pending completion   set done