cokelaer / sequana / 28164915809
70%
master: 67%

LAST BUILD BRANCH: main
DEFAULT BRANCH: master
Ran
Jobs 3
Files 207
Run time 1min
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coverage: 69.835% (-0.8%) from 70.652%
28164915809

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github

cokelaer 
Guard KEGGHelper.build_csv against failing KEGG organism list

k.organismIds queries rest.kegg.jp/list/organism, which currently returns
HTTP 400 and makes bioservices raise AttributeError instead of returning a
list. Resolve it defensively and bail out with a clear log message.

5 of 6 new or added lines in 1 file covered. (83.33%)

592 existing lines in 13 files now uncovered.

16398 of 23481 relevant lines covered (69.84%)

2.09 hits per line

Uncovered Changes

Lines Coverage ∆ File
1
54.72
 -45.28% sequana/kegg.py

Coverage Regressions

Lines Coverage ∆ File
309
9.54
 -75.55% sequana/enrichment/kegg.py
93
54.43
 7.87% sequana/kozak.py
50
64.0
 0.78% sequana/gff3.py
45
67.39
 0.72% sequana/variants.py
23
54.72
 -45.28% sequana/kegg.py
18
50.0
 3.23% sequana/scripts/main/somy_score.py
16
53.92
 0.28% sequana/somy.py
13
95.25
 0.69% sequana/fasta.py
10
27.63
 0.23% sequana/scripts/main/fasta.py
10
48.41
 0.33% sequana/scripts/main/summary.py
3
96.0
 0.9% sequana/cigar.py
1
97.62
 -2.38% sequana/metrics.py
1
97.06
 -1.47% sequana/summary.py
Jobs
ID Job ID Ran Files Coverage
1 28164915809.1 207
69.83
2 28164915809.2 207
69.84
3 28164915809.3 207
69.84
Source Files on build 28164915809