galantelab / sideRETRO / 166

Builds Branch Commit Type Ran Committer Via Coverage
166 canalysis FIX: cluster.c (prepare_query_stmt): blacklist_chr Avoid clusters from and to the chromosomes into blacklist_chr set push thiago-miller travis-ci pending completion   set done
165 canalysis FIX: dbscan.c (dbscan_cluster): Same point shared DBSCAN is not entirely deterministic: border points that are reachable from more than one cluster can be part of either cluster, depending on the order the data are processed. (Wikipedia) Fix t... push thiago-miller travis-ci pending completion   set done
164 canalysis FIX: db.c (clustering table) Fix foreign key issue by adding the clustering id as part of the weak key. Add gene_name as parental_gene_name in order to facilitate future analysis push thiago-miller travis-ci pending completion   set done
163 canalysis FIX: recluster.c (prepare_query_stmt): cluster_id Change cluster_id to id push thiago-miller travis-ci pending completion   set done
162 canalysis ADD: recluster.c interface Add reclustering step in order to validate the clusters found. The clusters will be analysed according to distance from, number of, and number of reads for reclustering each putative parental gene push thiago-miller travis-ci pending completion   set done
161 canalysis ADD: db.c: reclustering table Add reclustering table to hold validated clustering entries push thiago-miller travis-ci pending completion   set done
160 canalysis ADD: db.c: reclustering table Add reclustering table to hold validated clustering entries push thiago-miller travis-ci pending completion   set done
159 canalysis CHANGE: db.c (db_insert_clustering): rm cluster_id Remove cluster_id from clustering table schema. Now it became a weak entity push thiago-miller travis-ci pending completion   set done
158 tdev ADD: merge_call.c, cluster.c (blacklist_chr) Add option to avoid clustering at certain chromosomes. By default it avoides 'chrM' push thiago-miller travis-ci pending completion   set done
157 tdev Version 0.8.0 push thiago-miller travis-ci pending completion   set done
156 0.8.0 Version 0.8.0 push thiago-miller travis-ci pending completion   set done
155 master Version 0.8.0 push thiago-miller travis-ci pending completion   set done
154 tdev CHANGE: INSTALL.md -> INSTALL push thiago-miller travis-ci pending completion   set done
153 tdev FIX: exon.c (exon_tree_lookup_dump): Thread-safe The alignment_id was included inside ExonTree object, which in turn was shared among all threads. With no mutex, may occur shocking among all alignment_id values. In order to fix it, a new private ... push thiago-miller travis-ci pending completion   set done
152 tdev ADD: abnormal.c, exon.c, process_sample.c: loginfo Improve log messages for debugging and change attribute name num_threads in AbnormalArg to inc_step - this way is more descriptive about its function push thiago-miller travis-ci pending completion   set done