galantelab / sideRETRO / 220

Builds Branch Commit Type Ran Committer Via Coverage
220 tdev Version 0.11.0 push Thiago L. A. Miller travis-ci pending completion   set done
218 master Version 0.11.0 push Thiago L. A. Miller travis-ci pending completion   set done
217 rtc FIX: check_sider_cluster.c: flag == 0 push thiago-miller travis-ci pending completion   set done
216 rtc ADD: process_sample.c: --deduplicate option push thiago-miller travis-ci pending completion   set done
215 rtc ADD: merge_call.c (merge_call): Run retrocopy step push thiago-miller travis-ci pending completion   set done
214 rtc ADD: cluster.c (prepare_query_stmt): test type The dedup step set the alignment type to ABNORMAL_NONE flag if the read is a duplication. So, in the clustering step, it is necessary to avoid using those duplicated reads push thiago-miller travis-ci pending completion   set done
213 rtc ADD: dedup.c interface: Remove duplicated reads Add deduplication capability. Remove duplicated reads but one, which is called the primary read. Other tools, specilized in remove duplications, use some metric to choose the primary reads. For us, ... push thiago-miller travis-ci pending completion   set done
212 rtc ADD: abnormal.c (abnormal_classifier): Dup filter Add filter for PCR or optical duplicated reads push thiago-miller travis-ci pending completion   set done
211 rtc FIX: cluster.c, retrocopy.c (qname, source_id idx) There is the possibility that different BAM files share reads with the same query name. In order to avoid a mess to find the right mate, use the source_id along with qname when required to match ... push thiago-miller travis-ci pending completion   set done
210 rtc ADD: retrocopy.c (clean_retrocopy_tables) push thiago-miller travis-ci pending completion   set done
209 rtc ADD: retrocopy.c (calculate_orientation) push thiago-miller travis-ci pending completion   set done
208 rtc FIX: meson.build: sqlite3 version 3.28.0 Change sqlite3 minimum version to 3.28.0 in order to support RANK() functions push thiago-miller travis-ci pending completion   set done
203 rtc ADD: retrocopy.c: Init retrocopy annotation push thiago-miller travis-ci pending completion   set done
202 tdev Version 0.10.0 push thiago-miller travis-ci pending completion   set done
201 0.10.0 Version 0.10.0 push thiago-miller travis-ci pending completion   set done