broadinstitute / gamgee / 694

Builds Branch Commit Type Ran Committer Via Coverage
694 mc_add_field_conversion_api_175 Variant: separate api for type conversion fields As described in issue #175 we decided to provide two different APIs for individual and shared field access. One does implicit conversions and the other one throws exceptions if the type requested i... push MauricioCarneiro travis-ci pending completion   set done
693 master Add Variant::alignment_stop() accessor - add tests including GVCF Pull #185 jmthibault79 travis-ci pending completion   set done
692 jt_alignment_stop Add Variant::alignment_stop() accessor - add tests including GVCF push jmthibault79 travis-ci pending completion   set done
691 master Variant: eliminate gq and pl special getters Users should use the generic API for all fields. No reason to have specialized getters for a few ones. fixes #183 Pull #184 MauricioCarneiro travis-ci pending completion   set done
690 mc_eliminate_gq_and_pl Variant: eliminate gq and pl special getters Users should use the generic API for all fields. No reason to have specialized getters for a few ones. fixes #183 push MauricioCarneiro travis-ci pending completion   set done
689 ks_interval_sam_iteration_using_indexed_files_aug_14 Commit for Aug 14 push kshakir travis-ci pending completion   set done
688 jt_parse_rlen Accessors for rlen push jmthibault79 travis-ci pending completion   set done
687 master Merge pull request #167 from broadinstitute/mc_reimplement_shared_fields Variant: refactor of the shared field api push MauricioCarneiro travis-ci pending completion   set done
686 master adressing reviewer's comments Pull #167 MauricioCarneiro travis-ci pending completion   set done
686 mc_reimplement_shared_fields adressing reviewer's comments push MauricioCarneiro travis-ci pending completion   set done
685 jt_ref_block_mc Use rlen for end tag push jmthibault79 travis-ci pending completion   set done
684 jt_ref_block_mc Use missing() Save one call to reference_block_end() push jmthibault79 travis-ci pending completion   set done
683 jt_ref_block_traversal ReferenceBlockSplittingVariantIterator - uses htslib hack to modify Variant (TODO: use VariantBuilder) push jmthibault79 travis-ci pending completion   set done
682 jt_ref_block_traversal ReferenceBlockSplittingVariantIterator - uses htslib hack to modify Variant (TODO: use VariantBuilder) push jmthibault79 travis-ci pending completion   set done
681 ks_index_based_access_for_shared_and_individual_fields_aug_12 Commit for Aug 12 push kshakir travis-ci pending completion   set done