broadinstitute / gamgee / 729

Builds Branch Commit Type Ran Committer Via Coverage
729 ks_interval_sam_iteration_using_indexed_files_issue_7 Indexed iteration of bam/cram files. #7 push kshakir travis-ci pending completion   set done
730 master Indexed iteration of bam/cram files. #7 Pull #196 kshakir travis-ci pending completion   set done
728 master IndexedVariantReader/Iterator - heavily based on Khalid's IndexedSamReader/Iterator Pull #194 jmthibault79 travis-ci pending completion   set done
727 jt_variant_intervals IndexedVariantReader/Iterator - heavily based on Khalid's IndexedSamReader/Iterator push jmthibault79 travis-ci pending completion   set done
726 master Merge pull request #193 from broadinstitute/mc_refactor_fetch_next_record_192 Remove unnecessary move constructions from our iterators push jmthibault79 travis-ci pending completion   set done
724 mc_index_based_api_162 Variant: add index based field getter API individual and shared fields can be more efficiently accessed via indices looked up from the header once instead of doing the hash lookups every time you access a field (during traversal). This commit add... push MauricioCarneiro travis-ci pending completion   set done
725 master Variant: add index based field getter API individual and shared fields can be more efficiently accessed via indices looked up from the header once instead of doing the hash lookups every time you access a field (during traversal). This commit add... Pull #189 MauricioCarneiro travis-ci pending completion   set done
722 master update comments Pull #189 MauricioCarneiro travis-ci pending completion   set done
719 mc_index_based_api_162 Address reviewer's comments push MauricioCarneiro travis-ci pending completion   set done
720 master Address reviewer's comments Pull #189 MauricioCarneiro travis-ci pending completion   set done
718 master VariantIterator: remove unnecessary move construction Pull #193 MauricioCarneiro travis-ci pending completion   set done
717 mc_refactor_fetch_next_record_192 VariantIterator: remove unnecessary move construction push MauricioCarneiro travis-ci pending completion   set done
713 master Sam: implementation of mate_alignment_stop() * fix off-by-one bug on Sam::alignment_stop (it was reporting the base after the last inclusive base, contradicting the docs) * refactor cigar operator parsing routine from SamBuilder to Cigar class fo... Pull #190 MauricioCarneiro travis-ci pending completion   set done
712 mc_mate_alignment_stop Sam: implementation of mate_alignment_stop() * fix off-by-one bug on Sam::alignment_stop (it was reporting the base after the last inclusive base, contradicting the docs) * refactor cigar operator parsing routine from SamBuilder to Cigar class fo... push MauricioCarneiro travis-ci pending completion   set done
711 mc_mate_alignment_stop Sam: implementation of mate_alignment_stop() * fix off-by-one bug on Sam::alignment_stop (it was reporting the base after the last inclusive base, contradicting the docs) * refactor cigar operator parsing routine from SamBuilder to Cigar class fo... push MauricioCarneiro travis-ci pending completion   set done