1276

Builds	Branch	Commit	Type	Ran	Committer	Via	Coverage
1276	master	Rev htslib to be in sync with our fork, and remove ugly hack from SyncedVariantReader Hack is no longer needed now that we've patched bcf_sr_add_reader() in our htslib fork. Resolves #342	Pull #345	31 Oct 2014 06:42PM UTC	droazen	travis-ci	pending completion set done
1275	dr_rev_htslib_and_remove_synced_reader_hack	Rev htslib to be in sync with our fork, and remove ugly hack from SyncedVariantReader Hack is no longer needed now that we've patched bcf_sr_add_reader() in our htslib fork. Resolves #342	push	31 Oct 2014 06:33PM UTC	droazen	travis-ci	pending completion set done
1274	master	Copy Joel's excellent submodule update shell script from foghorn to gamgee This is really the only way we have found to work with branches that in turn point to custom branches for submodules. It just works!	Pull #344	31 Oct 2014 06:05PM UTC	droazen	travis-ci	pending completion set done
1273	dr_copy_foghorn_submodule_update_script	Copy Joel's excellent submodule update shell script from foghorn to gamgee This is really the only way we have found to work with branches that in turn point to custom branches for submodules. It just works!	push	31 Oct 2014 06:04PM UTC	droazen	travis-ci	pending completion set done
1272	master	Merge pull request #337 from broadinstitute/dr_fix_additional_reader_segfaults_on_nonexistent_files Handle file/index not found errors in reader classes gracefully instead of segfaulting!	push	31 Oct 2014 04:06AM UTC	MauricioCarneiro	travis-ci	pending completion set done
1271	master	Handle file/index not found errors in reader classes gracefully instead of segfaulting! This has been a common complaint against gamgee of late, and with very good reason! Resolves #336	Pull #337	30 Oct 2014 07:18PM UTC	droazen	travis-ci	pending completion set done
1270	dr_fix_additional_reader_segfaults_on_nonexistent_files	Handle file/index not found errors in reader classes gracefully instead of segfaulting! This has been a common complaint against gamgee of late, and with very good reason! Resolves #336	push	30 Oct 2014 07:03PM UTC	droazen	travis-ci	pending completion set done
1269	master	Merge pull request #335 from broadinstitute/dr_variantreader_fix_segfault_on_nonexistent_file Fix segfault in VariantReader on non-existent file	push	30 Oct 2014 02:50PM UTC	droazen	travis-ci	pending completion set done
1268	master	Fix segfault in VariantReader on non-existent file	Pull #335	29 Oct 2014 04:17PM UTC	droazen	travis-ci	pending completion set done
1267	dr_variantreader_fix_segfault_on_nonexistent_file	Fix segfault in VariantReader on non-existent file	push	29 Oct 2014 04:12PM UTC	droazen	travis-ci	pending completion set done
1266	master	Merge pull request #329 from broadinstitute/mc_cmake_clion First attempt at a CMAKE build system	push	29 Oct 2014 03:47AM UTC	MauricioCarneiro	travis-ci	pending completion set done
1263	master	Address @nsubtil comments on code-review * move find packages to root CMakeLists.txt * swtich add->definitions to target_compile_definitions	Pull #329	29 Oct 2014 02:23AM UTC	MauricioCarneiro	travis-ci	pending completion set done
1263	mc_cmake_clion	Address @nsubtil comments on code-review * move find packages to root CMakeLists.txt * swtich add->definitions to target_compile_definitions	push	29 Oct 2014 02:18AM UTC	MauricioCarneiro	travis-ci	pending completion set done
1262	master	Merge pull request #333 from broadinstitute/dr_variant_missing_function A missing() function for the Variant class	push	28 Oct 2014 08:23PM UTC	droazen	travis-ci	pending completion set done
1260	dr_variant_missing_function	A missing() function for the Variant class Sometimes we need to distinguish blank, default-constructed Variant objects from Variant objects with data. This change allows us to do so via the standard gamgee::missing() convention.	push	28 Oct 2014 08:04PM UTC	droazen	travis-ci	pending completion set done

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