Clinical-Genomics / microSALT / #248

Builds Branch Commit Type Ran Committer Via Coverage
#248 149-fix-missing-resistances Simplify check for genes in test Pull #179 samuell travis-ci
76.12
#247 149-fix-missing-resistances Keep only 100% identity matches Pull #179 samuell travis-ci
76.16
#246 149-fix-missing-resistances Simplify check for genes in test Pull #179 samuell travis-ci
76.12
#245 149-fix-missing-resistances Fix missing VIM gene by not deleting genes with the same coverage Pull #179 samuell travis-ci
76.12
#244 149-fix-missing-resistances Test for existance of VIM genes push samuell travis-ci
76.08
#243 rc400 Merge pull request #165 from Clinical-Genomics/noncareful_assembly_default (major) ### Added - Possibility to use the `--isolate` flag ### Changed - Version of SPAdes assembler v3.13.1 -> v3.14.0 - Default assembly mode to `--isolate` ... Pull #178 web-flow travis-ci
75.81
#242 149-fix-missing-resistances Test for existance of VIM genes push samuell travis-ci
76.08
#241 149-fix-missing-resistances Fix #149 by making regex specific and not matching multiple genes push samuell travis-ci
75.82
#240 noncareful_assembly_default remove bad tests Pull #165 karlnyr travis-ci
75.81
#239 rc400 Merge pull request #175 from Clinical-Genomics/174-move-ci-to-gha ### Changed - TravisCI converted to GitHub Actions - The install script uses `micromamba` instead of conda if inside GitHub actions - Some dependency specs were adjusted to ma... Pull #178 web-flow travis-ci
81.85
#238 149-fix-missing-resistances Fix #149 by making regex specific and not matching multiple genes Pull #173 samuell travis-ci
81.86
#237 149-fix-missing-resistances Return hits from scraping method and test that we receive OXA-48 push samuell travis-ci
81.86
#236 149-fix-missing-resistances Add more blast hits in resistance test data Pull #173 samuell travis-ci
82.12
#235 149-fix-missing-resistances-BACKUP Add pixi env for local testing Based on the environment.yml and requirements.txt files, with just some version relaxations to make the installation go through. push samuell travis-ci
81.85
#234 149-fix-missing-resistances Fix #149: Avoid promiscuous matching of gene name This needs to be follow up with additional checks The same change might need to be done for other matching as well. Pull #173 samuell travis-ci
81.85