Clinical-Genomics / microSALT / #265

Builds Branch Commit Type Ran Committer Via Coverage
#265 master Merge pull request #178 from Clinical-Genomics/rc400 (major) ### Added - Release candidate microSALT 4.0.0 push web-flow travis-ci
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#264 rc400 Use HTML codes for åäö Pull #178 samuell travis-ci
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#263 183-remove-kmer-tackning-col Use HTML codes for åäö push samuell travis-ci
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#262 183-remove-kmer-tackning-col Fix #183: Remove potentially confusing Kmer täckning column Also remove column width specs on MLST and Resistance tables push samuell travis-ci
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#261 183-remove-kmer-tackning-col Use HTML codes for åäö Pull #184 samuell travis-ci
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#260 183-remove-kmer-tackning-col Remove column width specs on MLST and Resistance tables Pull #184 samuell travis-ci
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#259 183-remove-kmer-tackning-col Fix #183: Remove potentially confusing Kmer täckning column Pull #184 samuell travis-ci
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#258 183-remove-kmer-tackning-col Fix missing vim genes (#182) * Replace Spades assembler with SKESA * Replace blaVIM test data with output from SKESA * Convert sequence naming in Skesa contigs fasta file into Spades format * Check if reference_length is set before showing it ... Pull #178 web-flow travis-ci
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#257 rc400 Fix missing vim genes (#182) * Replace Spades assembler with SKESA * Replace blaVIM test data with output from SKESA * Convert sequence naming in Skesa contigs fasta file into Spades format * Check if reference_length is set before showing it ... Pull #178 web-flow travis-ci
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#256 180-fix-missing-vim-genes Remove internal file paths Pull #182 samuell travis-ci
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#255 180-fix-missing-vim-genes Check if reference_length is set before showing This is so that the report rendering is not completely stopped if reference_length is not set Pull #182 samuell travis-ci
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#254 180-fix-missing-vim-genes Replace Spades assembler with SKESA push samuell travis-ci
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#253 180-fix-missing-vim-genes Fix code that would delete blast matches with identical coverage push samuell travis-ci
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#252 180-fix-missing-vim-genes Simplify check for genes in test push samuell travis-ci
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#251 180-fix-missing-vim-genes 149 fix missing resistances (#179) * Add more blast hits in resistance test data * Return hits in scraping method and fail test by requiring blaOXA-48 * Fix #149 by making regex specific and not matching multiple genes Pull #178 web-flow travis-ci
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