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angelolab / ark-analysis / 3744 / 1
94%
master: 94%

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DEFAULT BRANCH: master
Ran 10 Aug 2021 05:26PM UTC
Files 23
Run time 3min
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10 Aug 2021 05:20PM UTC coverage: 99.417% (+0.04%) from 99.375%
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Add MIBI tiling script (#427)

* Initial commit of tiling script

* Need to add init file for mibi

* Remove .DS_Store

* Address code review comments

* Add test for tiled region creation

* Add comment to moly point

* Add set_tiling_params stub

* Add test for set_tiling_params and fix PYCODESTYLE

* Condense monkeypatching into one line

* Change fov to region

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

* Clarify fov region data

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

* Ensure randomization can be set per fov

* Clarify comment about iterating through regions

* Read moly point data in set_tiling_utils instead of create_tiled_regions

* Update tiling notebook and created tiles JSON

* Add option to refuse moly points between runs

* Generate test tiling data in test_utils

* I don't want to write any more test functions

* Address more code review comments

* Make user inputs more intuitive and patch up tests

* Error message test nitpick

* Comment fixes

* Another comment nitpick

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

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