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angelolab / ark-analysis / 3744
94%

Build:
DEFAULT BRANCH: master
Ran 10 Aug 2021 05:26PM UTC
Jobs 1
Files 23
Run time 3min
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Add MIBI tiling script (#427)

* Initial commit of tiling script

* Need to add init file for mibi

* Remove .DS_Store

* Address code review comments

* Add test for tiled region creation

* Add comment to moly point

* Add set_tiling_params stub

* Add test for set_tiling_params and fix PYCODESTYLE

* Condense monkeypatching into one line

* Change fov to region

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

* Clarify fov region data

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

* Ensure randomization can be set per fov

* Clarify comment about iterating through regions

* Read moly point data in set_tiling_utils instead of create_tiled_regions

* Update tiling notebook and created tiles JSON

* Add option to refuse moly points between runs

* Generate test tiling data in test_utils

* I don't want to write any more test functions

* Address more code review comments

* Make user inputs more intuitive and patch up tests

* Error message test nitpick

* Comment fixes

* Another comment nitpick

Co-authored-by: Noah F. Greenwald <noahfgreenwald@gmail.com>

1365 of 1373 relevant lines covered (99.42%)

0.99 hits per line

Jobs
ID Job ID Ran Files Coverage
1 3744.1 (MPLBACKEND=Agg) 10 Aug 2021 05:26PM UTC 0
99.42
Travis Job 3744.1
Source Files on build 3744
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