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Ran 27 Aug 2015 06:52PM UTC

Files 450

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Committed 27 Aug 2015 05:31PM UTC coverage: 77.281% (-0.06%) from 77.336%

Job # CLOUD=false

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push

travis-ci

Committed by

droazen

Commit Message

Add integration tests showing that bai-indexed traversal by intervals on cram files works

-Add tests with an input cram and an output sam, bam, or cram with various intervals
 provided to the -L argument, and check that we get the expected read in the output
 for each set of intervals.

-Generalize CRAMReferenceIntegrationTest to CRAMSupportIntegrationTest, and centralize
 cram test data in the engine package.

Resolves #675

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