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master: 94%

Ran 05 Mar 2021 09:54PM UTC

Files 23

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Committed 05 Mar 2021 09:49PM UTC coverage: 97.299% (-0.06%) from 97.363%

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push

travis-ci-com

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web-flow

Commit Message

Batch the FlowSOM process (#399)

* Batch preprocessing step

* Adjust notebook to handle new preprocessing

* Add implementation with multiple fovs batched in run_trained_som.R

* Remove old cluster batching code

* Batch segmentation label loading

* Change segmentation labels loading to numpy

* Remove old commented code, change create_fov_pixel_mat to return matrices and create_pixel_matrix to save matrices

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angelolab / ark-analysis / 3356 / 1
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angelolab / ark-analysis / 3356 / 1
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master: 94%

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