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Ran 03 Dec 2020 07:31PM UTC

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Committed 03 Dec 2020 07:26PM UTC coverage: 99.525% (+0.8%) from 98.772%

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push

travis-ci-com

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web-flow

Commit Message

Fix bugs in visualize segmentation (#357)

* Fix bug in Segment_Image_Data: change data_xr to data_xr_summed

* Handle cases for both compartments and channels

* Make visualize_segmentation easier to understand

* Change compartments to channels and add comment allowing user to set fovs_to_display to None

* Logic and testing added for new plot overlay workflow

* Last commit before nuking previous implementation

* Nuke previous implementation

* Documentation fix

* Address code review

* Fix call in notebook

* Fix documentation for extract_delimited_names

* Address code review comments

* Assign to RGB channels in BGR order

* Add notebook visualization

* Address (hopefully) final review comments

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angelolab / ark-analysis / 2935 / 1
94%
master: 94%

README BADGES
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