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Ran 25 Oct 2020 03:10AM UTC

Files 25

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Committed 25 Oct 2020 03:08AM UTC coverage: 88.72% (-0.3%) from 89.02%

Job # 536.1

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Add ability to get timing data from scans (#149)

* Update URL to testing data

* Started testing matching between MRI and PMU timestamp

* Initial test to read times from dicoms

* Refactored test to use data_testing and add new format to dicom_times_to_ms. Need to update fieldmap and json in data-testing. More details in TODOs.

* Verify times B0 timeseries fits pressure data

* Added non-interpolated pmu on the graph

* Removed todos and updated field for json

* Small refactor

* Added get_acquisition_times function and TODOs

* Added comments

* Moved dicom_times_to_ms() to utils

* Renamed dicom_times_to_ms --> iso_times_to_ms

* Moved get_acquisition_times() to load_nifti.py

* Added comments

* Refactor get_acquisition_times to use nii and json

* Added correlation check

* Clean up

* Clean up imports

* Change variable name to iso

* Fix what is being checked for the correlation: fieldmap average and pmu pressure

* Fix travis error with np.isclose

Co-authored-by: Julien Cohen-Adad <jcohen@polymtl.ca>

Coverage Stats

700 of 789 relevant lines covered (88.72%)

0.89 hits per line

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shimming-toolbox / shimming-toolbox / 536 / 1 90% master: 90%

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master: 90%

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