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shimming-toolbox / shimming-toolbox / 536
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Build:
DEFAULT BRANCH: master
Ran 25 Oct 2020 03:10AM UTC
Jobs 1
Files 25
Run time 3s
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Add ability to get timing data from scans (#149)

* Update URL to testing data

* Started testing matching between MRI and PMU timestamp

* Initial test to read times from dicoms

* Refactored test to use data_testing and add new format to dicom_times_to_ms. Need to update fieldmap and json in data-testing. More details in TODOs.

* Verify times B0 timeseries fits pressure data

* Added non-interpolated pmu on the graph

* Removed todos and updated field for json

* Small refactor

* Added get_acquisition_times function and TODOs

* Added comments

* Moved dicom_times_to_ms() to utils

* Renamed dicom_times_to_ms --> iso_times_to_ms

* Moved get_acquisition_times() to load_nifti.py

* Added comments

* Refactor get_acquisition_times to use nii and json

* Added correlation check

* Clean up

* Clean up imports

* Change variable name to iso

* Fix what is being checked for the correlation: fieldmap average and pmu pressure

* Fix travis error with np.isclose

Co-authored-by: Julien Cohen-Adad <jcohen@polymtl.ca>

24 of 24 new or added lines in 2 files covered. (100.0%)

700 of 789 relevant lines covered (88.72%)

0.89 hits per line

Jobs
ID Job ID Ran Files Coverage
1 536.1 25 Oct 2020 03:10AM UTC 0
88.72
Travis Job 536.1
Source Files on build 536
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