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master: 88%

Ran 20 Oct 2020 07:37PM UTC

Files 23

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Committed 20 Oct 2020 07:35PM UTC coverage: 88.742% (+1.3%) from 87.451%

Job # 84.3

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Merge v0.1.10 (#15)

* Encapsulate BioProvDocument constructor actions into functions.

* Bump version number

* Add serializer_filter options to remove keys from serializer out

* Reformatting with Black after update

* Fixing Program.found error by adding another check to Program._getoutput()

* Adding envs on Project JSON reader

* Creating instance of EnvProv on Project JSON reader

* Added error handling for SeqFile loading

* Improve pretty printing of commands

* Improve Env constructor in Project deserializer

* Update CHANGELOG

* Bump version number

* Clearing notebook state

* Refactoring hashes with hashlib.
    - Added utils.dict_to_sha1() function
    - Removed EnvProv.env_set attribute
    - Refactored tests

* Remove unused import

* Add file_to_sha1() function

* Add sha1 attribute to File class

* Improve EnvProv JSON deserializer

* Refactor tests. Testing BioProvDocument with add_attributes=True

* Update CHANGELOG

* Improve pretty printing of commands.

* Improve default parameters of bioprov.programs.prodigal PresetProgram

* Update introduction tutorial

* Add serializer_filter method to File class

* Improve EnvProv namespace constructor

* Update introduction tutorial

* Update changelog

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1411 of 1590 relevant lines covered (88.74%)

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88%
master: 88%

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vinisalazar / BioProv / 84 / 3 88% master: 88%

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