vinisalazar / BioProv / 84

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travis-ci

Merge v0.1.10 (#15)

* Encapsulate BioProvDocument constructor actions into functions.

* Bump version number

* Add serializer_filter options to remove keys from serializer out

* Reformatting with Black after update

* Fixing Program.found error by adding another check to Program._getoutput()

* Adding envs on Project JSON reader

* Creating instance of EnvProv on Project JSON reader

* Added error handling for SeqFile loading

* Improve pretty printing of commands

* Improve Env constructor in Project deserializer

* Update CHANGELOG

* Bump version number

* Clearing notebook state

* Refactoring hashes with hashlib.
    - Added utils.dict_to_sha1() function
    - Removed EnvProv.env_set attribute
    - Refactored tests

* Remove unused import

* Add file_to_sha1() function

* Add sha1 attribute to File class

* Improve EnvProv JSON deserializer

* Refactor tests. Testing BioProvDocument with add_attributes=True

* Update CHANGELOG

* Improve pretty printing of commands.

* Improve default parameters of bioprov.programs.prodigal PresetProgram

* Update introduction tutorial

* Add serializer_filter method to File class

* Improve EnvProv namespace constructor

* Update introduction tutorial

* Update changelog

63 of 63 new or added lines in 23 files covered. (100.0%)

1381 of 1560 relevant lines covered (88.53%)

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