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Ran 22 Jun 2015 10:53PM UTC

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Committed 22 Jun 2015 10:48PM UTC coverage: 100.0%. Remained the same

Job # 58.2

Build Type

push

travis-ci

Committed by

tomkinsc

Commit Message

improvements to encoding and multi-allelic merges

genotype coding function can now specified in a separate python file
via the —codingFunctionClassFile, containing a GenoCoder class with a
coding_function(current_value, reference_allele, ancestral_allele) that
returns an array of “0” and “1” for selscan. The method used to combine
coded output for each allele of a multiallelic site is a bitwise
operator, now specified via the hidden —multiAllelicMergeFunction
argument. It accepts OR, AND, XOR. It is currently set to a default of
OR, though I believe it should perhaps be AND.

Run Details

5 of 5 relevant lines covered (100.0%)

1.0 hits per line

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