58
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master: %

Ran 22 Jun 2015 10:53PM UTC

Jobs 2

Files 1

Run time 6s

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Build # 58

Build Type

push

travis-ci

Committed by

tomkinsc

Commit Message

improvements to encoding and multi-allelic merges

genotype coding function can now specified in a separate python file
via the —codingFunctionClassFile, containing a GenoCoder class with a
coding_function(current_value, reference_allele, ancestral_allele) that
returns an array of “0” and “1” for selscan. The method used to combine
coded output for each allele of a multiallelic site is a bitwise
operator, now specified via the hidden —multiAllelicMergeFunction
argument. It accepts OR, AND, XOR. It is currently set to a default of
OR, though I believe it should perhaps be AND.

Run Details

5 of 5 relevant lines covered (100.0%)

2.0 hits per line

Jobs

ID	Job ID	Ran	Files	Coverage
1	58.1	22 Jun 2015 10:53PM UTC	0	100.0	Travis Job 58.1
2	58.2	22 Jun 2015 10:53PM UTC	0	100.0	Travis Job 58.2

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