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Ran 29 Aug 2020 02:06AM UTC

Files 15

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Committed 29 Aug 2020 02:03AM UTC coverage: 88.96% (+0.1%) from 88.841%

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push

travis-ci-com

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web-flow

Commit Message

Update distance matrix to xarray type (#200)

* Fix randomization error in synthetic spatial gen and begin updating type of distance matrix to xarray

* Update notebooks and spatial_analysis_utils functions to handle xarray data type for distance matrices

* Forgot to change spatial analysis script outside of Docker

* Further integration

* Fix closenum tests

* Address minor changes (aka other than dict passing)

* Fix centroid labelling with prop.label, which makes life hella easier

* Change Erin's data and adjust accordingly

* Pycodestyle and xarray import crap

* Last fixes

* Update expression matrix, calc_dist_matrix, and notebook to reflect string-only fov indexing

* Forgot to add new segmentation labels

* Change list to .values for indexing purposes

* Break up logic and update comments

* Fix summing error in closenum random

* Remove old data files

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master: 94%

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angelolab / ark-analysis / 1361 / 1 94% master: 94%

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Source Files on job 1361.1 (MPLBACKEND=Agg)

angelolab / ark-analysis / 1361 / 1
94%
master: 94%

README BADGES
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