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master: 81%

Ran 13 Jul 2020 10:47PM UTC

Files 26

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Committed 13 Jul 2020 10:43PM UTC coverage: 59.457% (+0.5%) from 58.959%

Job # MPLBACKEND=Agg

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travis-ci-com

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web-flow

Commit Message

Compartment extraction refactor (#123)

* nuclear label helper function

* test function for nuclear id finder

* switched to pandas array for regionprops

* testing of signal extraction

* moved regionprops inside helper function

* helper function for normalization

* first pass at compartment-specific CSV labels

* testing for full function

* pep8

* better docstrings and default values

* fancy formatting

* move error checking to main function

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angelolab / segmentation / 568 / 1
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