broadinstitute / viral-ngs / 1221 / 4
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master: 23%

Ran 27 Mar 2020 11:17PM UTC

Files 52

Run time 16s

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Committed 27 Mar 2020 11:07PM UTC coverage: 72.991% (-0.9%) from 73.847%

Job # CACHE_DIR="$HOME/misc_cache" MINICONDA_DIR="$HOME/miniconda" PIP_DIR="$HOME/virtualenv" GATK_PATH="$CACHE_DIR" PYTHONIOENCODING=UTF8 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov kmer_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils" DOCKER_REGISTRY="quay.io" DOCKER_REPO_PROD="quay.io/broadinstitute/viral-ngs" DOCKER_REPO_DEV="quay.io/broadinstitute/viral-ngs-dev" DOCKER_REGISTRY_MIRROR="docker.io" DOCKER_REPO_PROD_MIRROR="broadinstitute/viral-ngs" BOTO_CONFIG=/dev/null _JAVA_OPTIONS="-Xmx3g" TRAVIS_JOB=test_py36

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push

travis-ci-com

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Commit Message

ensure read_structure override works for CheckIlluminaDirectory (#1007)

ensure read_structure override works for CheckIlluminaDirectory during demux; error out if check fails

Run Details

2587 of 4380 branches covered (59.06%)

7310 of 10015 relevant lines covered (72.99%)

0.73 hits per line

Source Files on job 1221.4 (CACHE_DIR="$HOME/misc_cache" MINICONDA_DIR="$HOME/miniconda" PIP_DIR="$HOME/virtualenv" GATK_PATH="$CACHE_DIR" PYTHONIOENCODING=UTF8 PYTEST_ADDOPTS="-rsxX -n 2 --durations=25 --fixture-durations=10 --junit-xml=pytest.xml --cov-report= --cov broad_utils --cov illumina --cov assembly --cov interhost --cov intrahost --cov metagenomics --cov ncbi --cov read_utils --cov kmer_utils --cov reports --cov taxon_filter --cov tools --cov util --cov file_utils" DOCKER_REGISTRY="quay.io" DOCKER_REPO_PROD="quay.io/broadinstitute/viral-ngs" DOCKER_REPO_DEV="quay.io/broadinstitute/viral-ngs-dev" DOCKER_REGISTRY_MIRROR="docker.io" DOCKER_REPO_PROD_MIRROR="broadinstitute/viral-ngs" BOTO_CONFIG=/dev/null _JAVA_OPTIONS="-Xmx3g" TRAVIS_JOB=test_py36)