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coverage: 42.32% (-0.008%) from 42.328%
2402.2

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QSM Echo Combination (#346)

* Correct bug in b0_dem.m (magn to Magn)

* Remove upper bound on Magn threshold in b0_dem.m

* Add loop on all echoes for 3D data sets in b0_dem.m.

Also remove upper bound of 1 on magnitude threshold.
(This bound implied that magnitude was normalized?)

* Undo test we did on changing deltaTE for TE

* Correct 4th dim indexing of phase for 3D unwrapping.

* Correct bug in b0_dem.m (magn to Magn) (#342)

* Correct bug in b0_dem.m (magn to Magn)

* Remove upper bound on Magn threshold in b0_dem.m

* Add loop on all echoes for 3D data sets in b0_dem.m.

Also remove upper bound of 1 on magnitude threshold.
(This bound implied that magnitude was normalized?)

* Undo test we did on changing deltaTE for TE

* Correct 4th dim indexing of phase for 3D unwrapping.

* Commit unfinished QSM work to work on another station

* Add weighted average for echo combination in qsm_sb

* Correct bug in averageEchoesWithWeights

* Remove scaling to ppm from SHARP background field removal

* Echo combination (#360)

* Correct bug in b0_dem.m (magn to Magn)

* Remove upper bound on Magn threshold in b0_dem.m

* Add loop on all echoes for 3D data sets in b0_dem.m.

Also remove upper bound of 1 on magnitude threshold.
(This bound implied that magnitude was normalized?)

* Undo test we did on changing deltaTE for TE

* Correct 4th dim indexing of phase for 3D unwrapping.

* Commit unfinished QSM work to work on another station

* Add weighted average for echo combination in qsm_sb

* Correct bug in averageEchoesWithWeights

* Remove scaling to ppm from SHARP background field removal

* Move padding for SHARP before phase unwrapping for reproducibility

Correct bug for the no-SHARP case

* Echo combination (#363)

* Set non finite weights to 0 in averageEchoesWithWeights.m

* Add echo combination of magnitude for magnitude weighting

* exclude coverage

* Echo combination (#371)... (continued)

3240 of 7656 relevant lines covered (42.32%)

921.24 hits per line

Source Files on job 2402.2