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Ran 26 Nov 2019 09:32PM UTC

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Committed 26 Nov 2019 09:30PM UTC coverage: 68.14% (+5.7%) from 62.416%

Job # 114.3

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Fixed bug in ISBI txt file generation  (#20)

* Move `clean_up_annotations` to utils.py to facilitate re-use.

* Remove node_key from txt_to_graph

* Compare neighbors of G_gt to G_res in `classify_divisions`.

* Update `txt_to_graph` to ensure parent_frame combo exists, otherwise, don't add edge.

* Use `nx.DiGraph` to better classify error types in `txt_to_graph`.

* Fix `contig_tracks` to update both daughter AND parent info for new tracks.

* Add `trk_to_isbi` to convert trk files to txt files.

* Change assignments from list to tuple to remove numpy warning (Fixes #16)

* Add single nodes (with no edges) to graph even though they aren't used.

* Add tests for all `isbi_utils` functions

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524 of 769 relevant lines covered (68.14%)

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