114
90%

Ran 26 Nov 2019 09:32PM UTC

Jobs 4

Files 12

Run time 21s

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Build # 114

Build Type

push

travis-ci-com

Committed by

web-flow

Commit Message

Fixed bug in ISBI txt file generation  (#20)

* Move `clean_up_annotations` to utils.py to facilitate re-use.

* Remove node_key from txt_to_graph

* Compare neighbors of G_gt to G_res in `classify_divisions`.

* Update `txt_to_graph` to ensure parent_frame combo exists, otherwise, don't add edge.

* Use `nx.DiGraph` to better classify error types in `txt_to_graph`.

* Fix `contig_tracks` to update both daughter AND parent info for new tracks.

* Add `trk_to_isbi` to convert trk files to txt files.

* Change assignments from list to tuple to remove numpy warning (Fixes #16)

* Add single nodes (with no edges) to graph even though they aren't used.

* Add tests for all `isbi_utils` functions

Run Details

1604 of 2307 relevant lines covered (69.53%)

2.81 hits per line

Jobs

ID	Job ID	Ran	Coverage
1	114.1	26 Nov 2019 09:32PM UTC	68.14	Travis Job 114.1
2	114.2	26 Nov 2019 09:32PM UTC	72.3	Travis Job 114.2
3	114.3	26 Nov 2019 09:32PM UTC	68.14	Travis Job 114.3
4	114.4	26 Nov 2019 09:32PM UTC	72.3	Travis Job 114.4

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