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master: 59%

Ran 07 Jun 2019 09:35PM UTC

Files 121

Run time 9s

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Committed 07 Jun 2019 07:38PM UTC coverage: 68.093% (+1.3%) from 66.796%

Job # 11298.2

Build Type

push

travis-ci

Committed by

web-flow

Commit Message

Added flag to combine all labels (#2291)

* sct_extract_metric: Cleanup

* sct_extract_metric: Cleanup

* sct_extract_metric: Raise RunTimeError in case input label does not exist

* aggregate_slicewise: Enabled to combine labels and fix MAP estimation

In the previous implementation, for MAP, the ML estimation was using the first label of the combined labels. For example, if user asked for metric in the spinal cord, the beta_0[0] (from ML) would be only based on the first label (WM), not on all the labels (in that case, WM + GM).

* sct_extract_metric: Enabled combination of labels with flag -combine

* aggregate_slicewise: Now compatible for n-dim

* test_aggregate_slicewise: Added tests for combined metrics

* test_aggregate_slicewise: Removed sct_utils call

* test_aggregate_slicewise: Added approx (otherwise it fails)

Run Details

9198 of 13508 relevant lines covered (68.09%)

0.68 hits per line

neuropoly / spinalcordtoolbox / 11298 / 2
67%
master: 59%

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