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neuropoly / spinalcordtoolbox / 11298
67%

Build:
DEFAULT BRANCH: master
Ran 07 Jun 2019 08:01PM UTC
Jobs 4
Files 121
Run time 98min
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Added flag to combine all labels (#2291)

* sct_extract_metric: Cleanup

* sct_extract_metric: Cleanup

* sct_extract_metric: Raise RunTimeError in case input label does not exist

* aggregate_slicewise: Enabled to combine labels and fix MAP estimation

In the previous implementation, for MAP, the ML estimation was using the first label of the combined labels. For example, if user asked for metric in the spinal cord, the beta_0[0] (from ML) would be only based on the first label (WM), not on all the labels (in that case, WM + GM).

* sct_extract_metric: Enabled combination of labels with flag -combine

* aggregate_slicewise: Now compatible for n-dim

* test_aggregate_slicewise: Added tests for combined metrics

* test_aggregate_slicewise: Removed sct_utils call

* test_aggregate_slicewise: Added approx (otherwise it fails)

9211 of 13508 relevant lines covered (68.19%)

2.63 hits per line

Jobs
ID Job ID Ran Files Coverage
1 11298.1 07 Jun 2019 08:01PM UTC 0
66.74
Travis Job 11298.1
2 11298.2 07 Jun 2019 09:35PM UTC 0
68.09
Travis Job 11298.2
3 11298.3 07 Jun 2019 09:39PM UTC 0
68.09
Travis Job 11298.3
4 11298.4 07 Jun 2019 08:14PM UTC 0
66.74
Travis Job 11298.4
Source Files on build 11298
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