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Ran 15 Mar 2015 06:34PM UTC

Files 218

Run time 2min

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Committed 15 Mar 2015 06:23PM UTC coverage: 75.009% (-0.005%) from 75.014%

Job # TERM=dumb

Build Type

push

travis-pro

Committed by

droazen

Commit Message

Expose Feature headers, and provide convenient VCFHeader access in VariantWalker

-Within a tool, Feature headers can now be obtained from a FeatureContext within apply(),
 or from the inherited method getHeaderForFeatures() outside of apply() (eg., in onTraversalStart()).

-VariantWalkers have the additional inherited convenience method getHeaderForVariants()
 that returns the header for the driving source of variants typed as a VCFHeader.

-Engine-facing classes FeatureManager and FeatureDataSource now also expose headers.

Requested by Adam

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master: 81%

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