84: 78%

Ran 22 Mar 2019 03:41PM UTC

Files 197

Run time 12s

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Committed 22 Mar 2019 03:27PM UTC coverage: 82.031% (+0.01%) from 82.017%

Job # COVERALLS=true DB=mysql

Build Type

push

travis-ci

Committed by

ima23

Commit Message

Test for fetching softmasked sequence (#344)

* Data file to test the softmasked change to FastaSequence

* Added tests for softmasked sequence fetching.

* Removed unused variables.

* Added synonym for softmasked sequence fetching test.

* Replaced test masked file with copy of test file after adding some softmasked bases.

* Updated chromosome to match the new test file contents.

* Shifted softmasked sequence so other tests on the start of the chr work.

* Shifted softmasked sequence and added params to fetch softmasked sequence.

* Added test_masked file to testdata dir.

* This file has been moved to testdata dir.

* Updated path to the test file.

* Clear the fasta cache before testing seq without the masking parameter.

Coverage Stats

19949 of 24319 relevant lines covered (82.03%)

1533.97 hits per line

Ensembl / ensembl-variation / 2587 / 1
83%
release/84: 78%

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Source Files on job 2587.1 (COVERALLS=true DB=mysql)

Ensembl / ensembl-variation / 2587 / 1 83% release/84: 78%

README BADGES x

Markdown

Textile

RDoc

HTML

Rst

Source Files on job 2587.1 (COVERALLS=true DB=mysql)

Ensembl / ensembl-variation / 2587 / 1
83%
release/84: 78%

README BADGES
x