neuropoly / spinalcordtoolbox / 10636 / 1
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coverage: 67.369% (-0.09%) from 67.455%
SCT_MINICONDA=2 MPLBACKEND=Agg

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jcohenadad 
Fixed bug and clarified usage of -centerline viewer (#2183)

* sct_deepseg_sc: modif in usage for -centerline file

* sct_deepseg_lesion: modif in usage for -centerline file

* deepseg_sc: fix syntax bug for -centerline file

* deepseg_lesion: fix syntax bug for -centerline file

* deepseg_sc: output _labels-centerline when -centerline viewer

* deepseg_lesion: output _labels-centerline when -centerline viewer

* deepseg_sc: display temporary folder

* deepseg_lesion: display temporary folder

* deepseg_sc: output centerline when verbose 2

* deepseg_lesion: output centerline when verbose 2

* Fix I-S shift when -centerline viewer (#2189)

* deepseg_sc.crop: output the z coordinates

* deepseg.crop: compatibility

* deepseg_sc.uncrop: reconstruct the segmentation from the z where starts the centerline

* test_deepseg_sc.uncrop: compatibility

* deepseg_lesion.uncrop: compatibility

* deepseg_sc.core: resolve conflict

* deepseg_sc.core: resolve conflits bis

* sct_deepseg_sc: modif in usage for -centerline file

* sct_deepseg_lesion: modif in usage for -centerline file

* deepseg_sc: fix syntax bug for -centerline file

* deepseg_lesion: fix syntax bug for -centerline file

* deepseg_sc: output _labels-centerline when -centerline viewer

* deepseg_lesion: output _labels-centerline when -centerline viewer

* deepseg_sc: display temporary folder

* deepseg_lesion: display temporary folder

* deepseg_sc: output centerline when verbose 2

* deepseg_lesion: output centerline when verbose 2

9883 of 14670 relevant lines covered (67.37%)

0.67 hits per line

Source Files on job 10636.1 (SCT_MINICONDA=2 MPLBACKEND=Agg)